Factsheet for GSMUA_Achr9P08310_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09750_001
GSMUA_Achr1P26140_001
GSMUA_Achr2P19760_001
GSMUA_Achr3P13070_001
GSMUA_Achr3P28230_001
GSMUA_Achr4P09450_001
GSMUA_Achr4P12950_001
GSMUA_Achr4P18240_001
GSMUA_Achr4P20150_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P25220_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P22600_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	GSMUA_Achr10P...	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr6P07390_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr6P12780_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr6P29070_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr9P08310_001	AT1G59750.1	22096563
AT1G59750.1	GSMUA_Achr10P...	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr6P07390_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr6P12780_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr6P29070_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr9P08310_001	AT1G59750.1	24485461
AT1G59750.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT1G59750.1	GSMUA_Achr1P09750_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr1P26140_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr3P13070_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr3P28230_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr4P09450_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr4P12950_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr4P20150_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr8P25220_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr9P22600_001	AT3G50060.1	17675404
AT1G59750.1	GSMUA_AchrUn_...	AT3G50060.1	17675404
AT1G59750.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT1G59750.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT1G59750.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT1G59750.1	GSMUA_AchrUn_...	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	81.93	57.25
GSMUA_Achr10P...	Banana	nucleus	73.31	52.97
GSMUA_Achr6P12780_001	Banana	nucleus	74.54	52.16
Zm00001d050781_P001	Maize	nucleus	66.32	51.27
GSMUA_Achr6P07390_001	Banana	nucleus	67.97	50.53
EES06968	Sorghum	nucleus	69.2	50.15
KRH26266	Soybean	nucleus	68.38	50.08
KRH06026	Soybean	nucleus	68.38	50.08
Os02t0557200-01	Rice	nucleus	69.2	49.7
EES10850	Sorghum	nucleus	67.15	49.47
Solyc01g103050.2.1	Tomato	nucleus	65.5	48.78
VIT_18s0089g00910.t01	Wine grape	nucleus	64.89	48.69
TraesCS2D01G307600.1	Wheat	nucleus	65.09	48.47
TraesCS2B01G326400.1	Wheat	nucleus	65.09	48.47
TraesCS2A01G309300.1	Wheat	nucleus	65.09	48.47
PGSC0003DMT400053380	Potato	nucleus	65.09	48.47
KRH51289	Soybean	nucleus	66.74	48.22
Os04t0442000-01	Rice	nucleus	66.53	48.14
VIT_12s0035g01800.t01	Wine grape	nucleus	66.94	48.08
Zm00001d003601_P006	Maize	nucleus	66.53	47.51
HORVU2Hr1G076920.3	Barley	nucleus	65.09	47.46
Zm00001d016838_P001	Maize	nucleus	68.38	47.37
CDY27291	Canola	nucleus	60.16	47.33
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.13	45.82
AT1G59750.1	Thale cress	nucleus	61.81	45.26
Bra035427.1-P	Field mustard	nucleus	61.6	45.11
CDY65065	Canola	nucleus	61.19	45.08
CDY33603	Canola	nucleus	60.99	44.93
GSMUA_AchrUn_...	Banana	nucleus	52.57	40.31
GSMUA_Achr10P...	Banana	nucleus	54.21	39.58
GSMUA_Achr7P24330_001	Banana	nucleus	53.8	39.34
GSMUA_Achr2P19760_001	Banana	nucleus	52.77	38.47
GSMUA_Achr6P08090_001	Banana	nucleus	56.26	33.25
GSMUA_Achr10P...	Banana	nucleus	56.06	33.13
GSMUA_AchrUn_...	Banana	mitochondrion	34.7	33.07
GSMUA_Achr6P16450_001	Banana	nucleus	55.24	30.81
GSMUA_AchrUn_...	Banana	nucleus	54.41	29.98
GSMUA_Achr3P10240_001	Banana	nucleus	37.37	29.35
GSMUA_Achr1P08230_001	Banana	mitochondrion	36.55	26.81
GSMUA_Achr5P26580_001	Banana	nucleus	41.27	24.91
GSMUA_Achr11P...	Banana	nucleus	40.04	24.07
GSMUA_Achr11P...	Banana	nucleus	40.66	23.88
GSMUA_Achr4P25960_001	Banana	nucleus	39.22	23.85
GSMUA_Achr5P02450_001	Banana	nucleus	40.45	23.79
GSMUA_Achr3P23290_001	Banana	nucleus	40.04	23.78
GSMUA_Achr6P19850_001	Banana	nucleus	40.66	23.16
GSMUA_Achr1P20040_001	Banana	nucleus	36.14	22.51
GSMUA_Achr11P...	Banana	nucleus	42.09	22.45
GSMUA_Achr5P00590_001	Banana	nucleus	41.68	22.33
GSMUA_Achr9P18170_001	Banana	nucleus	37.37	21.31
GSMUA_Achr9P14090_001	Banana	nucleus	38.19	20.44
GSMUA_Achr6P36980_001	Banana	nucleus	35.11	19.93
GSMUA_Achr3P05460_001	Banana	nucleus	38.4	19.22
GSMUA_Achr6P01740_001	Banana	nucleus	39.43	18.48
GSMUA_Achr1P20000_001	Banana	nucleus	35.32	17.71
GSMUA_Achr8P23850_001	Banana	nucleus	37.78	17.24
GSMUA_Achr5P05010_001	Banana	nucleus	29.77	16.65
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	31.62	14.67
GSMUA_Achr8P13620_001	Banana	nucleus	8.83	8.88

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G08310_001	EnsemblPlants:GSMUA_Achr9P08310_001	EnsemblPlants:GSMUA_Achr9T08310_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0TYJ0	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF24	SMART:SM01019	SUPFAM:SSF101936	SignalP:SignalP-noTM	UniParc:UPI00029666D9	SEG:seg

Description

Auxin response factor 7 [Source:GMGC_GENE;Acc:GSMUA_Achr9G08310_001]

Coordinates

chr9:-:5300159..5304683

Molecular Weight (calculated)

54604.8 Da

IEP (calculated)

7.833

GRAVY (calculated)

-0.444

Length

487 amino acids

Sequence
(BLAST)

001: MLILLFLTVG GKFLYLGPSQ DVLYPELWKA CAGPLVTLPR EGERVYYFPQ GHMEQLEAST DQELDQQMPL FDLPSKILCR VVYAEPDTDE VYAHITLHPE
101: INQGEVTSPD PPLPEPKTCN VRSFCKTLTA SDTSTHGGFS VLRKHADECL PPLDMTQNPP SQELVAKDLH ENEWRFRHIF RGQPRRHLLT TGWSVFVSSK
201: RLVAGDAFIF LRGENDELRV GVRRLMRQLN SMPSSVISSH SMHLGVLATA SHALATGTLF SVFYKPRTSR SEFIISVNKY LEAKNNKFSV GMRFKMRFEG
301: DEAPEQRFSG TIIGVDTASS RWKDSEWRSL KVQWDEPSSI PRPDRVSPWE LEPLLTGTPN SQPVQRNKRT RPSASPTITS DITPAFGLWK SPAESTRTFS
401: VSGLQRGTKL HTSSCPTSRF LSASKPGLIE FNASNKSSAA NIPMCRPITS EHQTDSFGAD KEHSERKQET STGCWLFGIQ LVESSAM

Best Arabidopsis Sequence Match ( AT1G59750.1 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.