Factsheet for TraesCS2D01G307600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G156600.1
TraesCS1B01G173700.1
TraesCS1D01G155100.1
TraesCS2A01G309300.1
TraesCS2A01G380300.1
TraesCS2B01G326400.1
TraesCS2B01G397300.1
TraesCS2D01G307600.1
TraesCS2D01G376600.1
TraesCS3A01G159200.1
TraesCS3B01G190100.1
TraesCS3D01G166700.1
TraesCS5A01G159600.1
TraesCS5B01G157300.1
TraesCS5D01G164600.1
TraesCS6A01G222300.1
TraesCS6B01G258800.1
TraesCS6D01G212700.1
TraesCS7A01G446900.1
TraesCS7B01G346700.1
TraesCS7D01G436800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	TraesCS2A01G309300.1	AT1G59750.1	22096563
AT1G59750.1	TraesCS2B01G326400.1	AT1G59750.1	22096563
AT1G59750.1	TraesCS2D01G307600.1	AT1G59750.1	22096563
AT1G59750.1	TraesCS2A01G309300.1	AT1G59750.1	24485461
AT1G59750.1	TraesCS2B01G326400.1	AT1G59750.1	24485461
AT1G59750.1	TraesCS2D01G307600.1	AT1G59750.1	24485461
AT1G59750.1	TraesCS1A01G156600.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS1B01G173700.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS1D01G155100.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS2A01G380300.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS2B01G397300.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS2D01G376600.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS6A01G222300.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS6B01G258800.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS6D01G212700.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS7A01G446900.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS7B01G346700.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS7D01G436800.1	AT2G28350.1	22096563
AT1G59750.1	TraesCS5A01G159600.1	AT3G50060.1	17675404
AT1G59750.1	TraesCS5B01G157300.1	AT3G50060.1	17675404
AT1G59750.1	TraesCS5D01G164600.1	AT3G50060.1	17675404
AT1G59750.1	TraesCS3A01G159200.1	AT3G61830.1	22096563
AT1G59750.1	TraesCS3B01G190100.1	AT3G61830.1	22096563
AT1G59750.1	TraesCS3D01G166700.1	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G309300.1	Wheat	nucleus	98.93	98.93
TraesCS2B01G326400.1	Wheat	nucleus	98.62	98.62
HORVU2Hr1G076920.3	Barley	nucleus	96.79	94.76
Os04t0442000-01	Rice	nucleus	81.65	79.35
EES10850	Sorghum	nucleus	79.05	78.21
Zm00001d003601_P006	Maize	nucleus	77.52	74.34
GSMUA_Achr9P08310_001	Banana	vacuole	48.47	65.09
GSMUA_Achr10P...	Banana	nucleus	64.68	62.76
PGSC0003DMT400053380	Potato	nucleus	62.23	62.23
Solyc01g103050.2.1	Tomato	nucleus	62.08	62.08
KRH26266	Soybean	nucleus	62.84	61.8
VIT_18s0089g00910.t01	Wine grape	nucleus	61.01	61.48
VIT_12s0035g01800.t01	Wine grape	nucleus	63.61	61.36
KRH06026	Soybean	nucleus	62.23	61.2
GSMUA_Achr6P07390_001	Banana	nucleus	61.16	61.07
GSMUA_Achr6P12780_001	Banana	nucleus	64.68	60.78
CDY27291	Canola	nucleus	57.19	60.42
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	64.07	60.11
KRH51289	Soybean	nucleus	61.01	59.2
AT1G59750.1	Thale cress	nucleus	59.79	58.8
CDY33603	Canola	nucleus	58.41	57.79
CDY65065	Canola	nucleus	58.26	57.64
Bra035427.1-P	Field mustard	nucleus	58.56	57.59
TraesCS3D01G434700.1	Wheat	nucleus	47.71	39.2
TraesCS3D01G166700.1	Wheat	nucleus	42.35	36.54
TraesCS3D01G442000.7	Wheat	nucleus	46.79	34.54
TraesCS2D01G548900.1	Wheat	nucleus	37.16	29.17
TraesCS7D01G449900.2	Wheat	nucleus	37.61	27.09
TraesCS6D01G127600.2	Wheat	nucleus	37.77	26.65
TraesCS5D01G045700.2	Wheat	nucleus	35.93	26.11
TraesCS2D01G491200.2	Wheat	nucleus	34.25	23.46
TraesCS7D01G161900.1	Wheat	nucleus	35.78	21.97
TraesCS6D01G102300.1	Wheat	nucleus	37.77	21.88
TraesCS7D01G250100.4	Wheat	nucleus	35.63	21.34
TraesCS7D01G409700.1	Wheat	nucleus	36.39	20.26

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009733	GO:GO:0009987	GO:GO:0010150	GO:GO:0042802	GO:GO:0045892
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:TraesCS2D01G307600	EnsemblPlants:TraesCS2D01G307600.1	TIGR:cd10017	:

Description

No Description!

Coordinates

chr2D:-:394536499..394541014

Molecular Weight (calculated)

72525.6 Da

IEP (calculated)

5.899

GRAVY (calculated)

-0.414

Length

654 amino acids

Sequence
(BLAST)

001: MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE
101: ANQGELTSLG PEPQELEKGT IHSFCKTLTA SDTSTHGGFS VLRRHAEECL PPLDMSQNPP CQELVAKDLH GTDWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: RLVAGDAFIF LRGENGELRV GVRRHMRQVN NMPSSVISSH SMHLGVLATA SHAISTGTLF SVFYKPRTSQ SEFVVSVNKY LEAKKQNISV GMRFKMKFEG
301: DEALERRFSG TIIGIGSTPM VSTSLWADSD WKSLKVQWDE PSSILRPDRV SPWELEPLDA ANPQPPQPPL RNKRPRLPAS PSVVPELAPK FGLWKSPAEP
401: SQTLSFSEPQ QARGLFTNSR FSSSSNVAFN QFYWPARESR EDSYAGSTNK VTVERKLEPA AGGCRLFGIE IRSAVDETQP VLTVSGDGYD QTAASVDVDS
501: GELSQPSNIN NSGAQAASSE RALLETQSRQ VRSCTKVIMT GMAVGRAVDL TKLYGYVDLH CKLEEMFDIQ GELCSTLKKW QVVYADEEDD MMLVGDDPWD
601: EFCNMAKRIY IYTYEEAKQL APKATKLSRV NSSHESVTPQ SGSDYPASFA NADC

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.