Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G436800.1 | Wheat | nucleus | 97.41 | 97.27 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 97.98 | 97.0 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 95.97 | 95.55 |
| Os06t0685700-01 | Rice | nucleus | 85.3 | 84.57 |
| EER88840 | Sorghum | nucleus | 83.14 | 81.38 |
| Zm00001d014507_P002 | Maize | nucleus | 81.27 | 77.79 |
| Zm00001d000358_P001 | Maize | nucleus | 76.37 | 75.71 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 61.96 | 70.84 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 55.48 | 67.19 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 50.0 | 66.86 |
| GSMUA_Achr11P... | Banana | nucleus | 51.73 | 66.36 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 52.59 | 65.3 |
| GSMUA_Achr11P... | Banana | nucleus | 56.48 | 64.9 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 51.44 | 64.79 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 64.41 | 62.87 |
| Solyc09g007810.2.1 | Tomato | nucleus | 62.39 | 62.39 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 55.76 | 62.12 |
| PGSC0003DMT400055522 | Potato | nucleus | 61.24 | 61.42 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 61.1 | 61.36 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 59.51 | 60.82 |
| CDY43553 | Canola | nucleus | 52.88 | 60.07 |
| KRH22880 | Soybean | nucleus | 57.64 | 59.7 |
| KRH25023 | Soybean | nucleus | 60.23 | 59.63 |
| KRH26435 | Soybean | nucleus | 60.09 | 59.57 |
| CDX68620 | Canola | nucleus | 52.74 | 59.32 |
| Solyc11g069500.1.1 | Tomato | nucleus | 59.37 | 58.94 |
| PGSC0003DMT400020874 | Potato | nucleus | 59.37 | 58.94 |
| KRH32480 | Soybean | nucleus | 59.22 | 58.71 |
| KRH29907 | Soybean | nucleus | 58.79 | 58.54 |
| Bra011162.1-P | Field mustard | nucleus | 54.32 | 58.27 |
| AT4G30080.1 | Thale cress | nucleus | 55.91 | 57.91 |
| KRG95987 | Soybean | nucleus | 57.64 | 57.14 |
| CDY15734 | Canola | nucleus | 55.76 | 56.91 |
| CDY04557 | Canola | nucleus | 56.05 | 56.79 |
| Bra011955.1-P | Field mustard | nucleus | 57.06 | 56.17 |
| AT2G28350.1 | Thale cress | nucleus | 55.19 | 55.27 |
| PGSC0003DMT400062489 | Potato | nucleus | 53.6 | 55.03 |
| KRG91907 | Soybean | nucleus | 46.69 | 54.64 |
| Solyc06g075150.2.1 | Tomato | nucleus | 52.74 | 54.55 |
| KRH34867 | Soybean | nucleus | 47.84 | 54.25 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 55.33 | 54.24 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 58.36 | 54.22 |
| Bra024109.1-P | Field mustard | nucleus | 51.3 | 51.3 |
| Solyc10g086130.1.1 | Tomato | nucleus | 42.8 | 47.07 |
| CDY46728 | Canola | nucleus | 54.9 | 45.14 |
| CDY30172 | Canola | nucleus | 51.59 | 43.13 |
| TraesCS3B01G273400.2 | Wheat | nucleus | 26.08 | 25.64 |
| TraesCS3B01G327000.1 | Wheat | nucleus | 24.06 | 25.3 |
| TraesCS1B01G347900.2 | Wheat | nucleus | 25.36 | 25.21 |
| TraesCS1B01G424700.1 | Wheat | nucleus | 26.22 | 24.53 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS7B01G346700 | EnsemblPlants:TraesCS7B01G346700.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:602938357..602941206
Molecular Weight (calculated)
75185.6 Da
IEP (calculated)
7.871
GRAVY (calculated)
-0.321
Length
694 amino acids
Sequence
(BLAST)
(BLAST)
001: MITFVDSAAG ERERGEGPRC LDPQLWHACA GGMVQMPPPG SRVYYFPQGH AEHAQGQAGA VDFPPGARLQ ALVLCRVAAV RFMADPDTDE VFAKIRLVPA
101: RPQDDADDAI AAAAAGQEDK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT TGWSSFVNQK
201: KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPELLPPPP PAATGNYGGF SMFLRGEEDG GNKMMGARGK VKVRVRPEEV AEAANLAASG QPFDVLYYPR
301: ASTPEFCVRA AAVRAAMRTQ WCPGMRFKMA FETEDSSRIS WFMGTVSAVQ VADPIRWPNS PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMPAIHLAPF
401: SPPRKKLCVP FYPDLPVDGQ FPAPMFHGNP LGRGGVGPMC YFPDGTPAGI QGARHAQFGI SLSDLHLNKL QSSLSPHGLH QVDHGGQPRI AAGLIIGHPA
501: ARDDISCMLT IGNHQSNNKS DVKKASPQLM LFGKPILTEQ QITLGNSGGF SPSAARKSSS EMSAEKSANN SDLPSPQSNQ NGTTKNLSCR GVPLCQDNKV
601: LDLGLDTGHC KIFMQSEDVG RTLDLTAVGS YEELYRRLSD MFGMEKAELM SHVFYRDAAG ALKHTGDEPF SDFTKTARRL TILTDTSGDS SVAS
101: RPQDDADDAI AAAAAGQEDK PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY RGTPRRHLLT TGWSSFVNQK
201: KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPELLPPPP PAATGNYGGF SMFLRGEEDG GNKMMGARGK VKVRVRPEEV AEAANLAASG QPFDVLYYPR
301: ASTPEFCVRA AAVRAAMRTQ WCPGMRFKMA FETEDSSRIS WFMGTVSAVQ VADPIRWPNS PWRLLQVTWD EPDLLQNVKR VSPWLVELVS NMPAIHLAPF
401: SPPRKKLCVP FYPDLPVDGQ FPAPMFHGNP LGRGGVGPMC YFPDGTPAGI QGARHAQFGI SLSDLHLNKL QSSLSPHGLH QVDHGGQPRI AAGLIIGHPA
501: ARDDISCMLT IGNHQSNNKS DVKKASPQLM LFGKPILTEQ QITLGNSGGF SPSAARKSSS EMSAEKSANN SDLPSPQSNQ NGTTKNLSCR GVPLCQDNKV
601: LDLGLDTGHC KIFMQSEDVG RTLDLTAVGS YEELYRRLSD MFGMEKAELM SHVFYRDAAG ALKHTGDEPF SDFTKTARRL TILTDTSGDS SVAS
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.