Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15734 | Canola | nucleus | 97.96 | 98.68 |
| Bra011955.1-P | Field mustard | nucleus | 99.85 | 97.02 |
| AT2G28350.1 | Thale cress | nucleus | 89.64 | 88.6 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 10.51 | 64.29 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 66.28 | 63.85 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 50.8 | 60.73 |
| KRH22880 | Soybean | nucleus | 59.12 | 60.45 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 53.28 | 60.13 |
| GSMUA_Achr11P... | Banana | nucleus | 52.7 | 59.77 |
| GSMUA_Achr11P... | Banana | nucleus | 47.01 | 59.52 |
| KRH26435 | Soybean | nucleus | 60.29 | 59.0 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 44.53 | 58.77 |
| KRH29907 | Soybean | nucleus | 59.71 | 58.68 |
| Solyc11g069500.1.1 | Tomato | nucleus | 59.85 | 58.66 |
| PGSC0003DMT400020874 | Potato | nucleus | 59.71 | 58.51 |
| KRH25023 | Soybean | nucleus | 59.85 | 58.49 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 45.99 | 57.17 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 8.76 | 57.14 |
| CDY43553 | Canola | nucleus | 50.66 | 56.79 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 46.28 | 56.71 |
| Os06t0685700-01 | Rice | nucleus | 57.66 | 56.43 |
| CDX68620 | Canola | nucleus | 50.8 | 56.4 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 12.41 | 56.29 |
| Zm00001d014013_P002 | Maize | nucleus | 52.7 | 56.06 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 56.79 | 56.05 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 56.79 | 55.97 |
| EER88840 | Sorghum | nucleus | 57.37 | 55.43 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 56.5 | 55.21 |
| Os04t0519700-01 | Rice | nucleus | 31.53 | 55.1 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 55.91 | 54.95 |
| EER94066 | Sorghum | nucleus | 55.04 | 54.72 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 54.45 | 54.22 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 54.45 | 54.22 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 54.6 | 54.12 |
| Zm00001d032683_P001 | Maize | nucleus | 53.72 | 54.04 |
| Os10t0479900-01 | Rice | nucleus | 54.74 | 53.72 |
| Solyc06g075150.2.1 | Tomato | nucleus | 52.55 | 53.65 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 53.87 | 53.63 |
| PGSC0003DMT400062489 | Potato | nucleus | 52.55 | 53.25 |
| Zm00001d014507_P002 | Maize | nucleus | 56.2 | 53.1 |
| Zm00001d000358_P001 | Maize | nucleus | 53.87 | 52.71 |
| Os02t0628600-01 | Rice | nucleus | 51.53 | 51.84 |
| EES05458 | Sorghum | nucleus | 52.85 | 51.13 |
| Zm00001d017284_P001 | Maize | nucleus | 51.24 | 49.65 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 48.61 | 49.55 |
| Zm00001d051172_P001 | Maize | nucleus | 50.8 | 48.95 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 50.37 | 48.32 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 49.93 | 48.31 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 48.91 | 47.18 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 50.22 | 46.05 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 49.63 | 44.8 |
| TraesCS6D01G212700.1 | Wheat | plastid | 49.78 | 44.34 |
| KXG36152 | Sorghum | nucleus | 41.17 | 42.53 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 24.67 | 41.83 |
| CDY46728 | Canola | nucleus | 51.53 | 41.82 |
| KXG26729 | Sorghum | nucleus, plastid | 42.77 | 40.58 |
| CDY30172 | Canola | nucleus | 48.76 | 40.24 |
| Zm00001d025871_P001 | Maize | nucleus | 33.72 | 39.29 |
| CDX79239 | Canola | nucleus | 30.8 | 38.79 |
| CDX68039 | Canola | nucleus | 30.8 | 38.72 |
| CDX88392 | Canola | nucleus | 29.34 | 37.92 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 11.24 | 34.84 |
| CDX81024 | Canola | cytosol | 3.5 | 34.78 |
| CDX83839 | Canola | mitochondrion | 4.67 | 30.48 |
| CDY17209 | Canola | nucleus | 24.96 | 28.41 |
| CDY37679 | Canola | nucleus | 24.53 | 28.28 |
| CDY27929 | Canola | nucleus | 24.67 | 27.8 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 12.41 | 26.15 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078EUC1 | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | EnsemblPlants:CDY04557 | ProteinID:CDY04557 | ProteinID:CDY04557.1 | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00118741001 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EF0DBA | SEG:seg |
Description
BnaA07g13830D
Coordinates
chrLK031955:+:741597..744379
Molecular Weight (calculated)
75892.1 Da
IEP (calculated)
7.768
GRAVY (calculated)
-0.401
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS
101: PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR
201: SETGDLCVGI RRAKRGGFLR DDEITTSKLM MMKRNATGGG GNANDANAPG GRVRVEAVAE AVARAACGQA FEVVYYPRAS TPEFCVKASD VRSAMRIRWC
301: SGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP RKKLRIPQPF DFPFDGTKFP
401: MFSPGFAAGN NGGGESMCYL STNDNNNNAP AGIQGARQAQ QLFGSPSPSL LSDLNLNTFH SGNKLQQSSS SPAMFLSGFN PRHHYDNIVV PRQTRDAEFN
501: NNISCSLTIG NPGLVQDKKK SGSVKTHQFL LFGQPILTEQ QVMNRKRALE EEAEKEEKGG LTWNYGLQGI ETGHCKVFME SEDVGRTLDL SVIGSYQELY
601: RKLAEMFGIE ERSDLLTHVV YRDANGVTKR IGDEPFSDFM RATKRLTIKM DISGDNVRKT WITGIRNGEN GIDSSTKTGQ LSIFA
101: PDVNGNEKPA SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL IAGDSIVFLR
201: SETGDLCVGI RRAKRGGFLR DDEITTSKLM MMKRNATGGG GNANDANAPG GRVRVEAVAE AVARAACGQA FEVVYYPRAS TPEFCVKASD VRSAMRIRWC
301: SGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP RKKLRIPQPF DFPFDGTKFP
401: MFSPGFAAGN NGGGESMCYL STNDNNNNAP AGIQGARQAQ QLFGSPSPSL LSDLNLNTFH SGNKLQQSSS SPAMFLSGFN PRHHYDNIVV PRQTRDAEFN
501: NNISCSLTIG NPGLVQDKKK SGSVKTHQFL LFGQPILTEQ QVMNRKRALE EEAEKEEKGG LTWNYGLQGI ETGHCKVFME SEDVGRTLDL SVIGSYQELY
601: RKLAEMFGIE ERSDLLTHVV YRDANGVTKR IGDEPFSDFM RATKRLTIKM DISGDNVRKT WITGIRNGEN GIDSSTKTGQ LSIFA
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Arabidopsis Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.