Factsheet for HORVU2Hr1G089670.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G035720.2
HORVU1Hr1G041770.1
HORVU2Hr1G010630.1
HORVU2Hr1G010670.1
HORVU2Hr1G010690.1
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G033540.2
HORVU5Hr1G038630.1
HORVU5Hr1G050990.4
HORVU5Hr1G051010.2
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G048050.2
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT2G28350.1	HORVU3Hr1G032230.6	AT1G34310.1	22096563
AT2G28350.1	HORVU1Hr1G041770.1	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089660.8	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089670.1	AT2G28350.1	22096563
AT2G28350.1	HORVU3Hr1G081710.1	AT2G28350.1	22096563
AT2G28350.1	HORVU4Hr1G078490.1	AT2G28350.1	22096563
AT2G28350.1	HORVU5Hr1G024100.1	AT2G28350.1	22096563
AT2G28350.1	HORVU6Hr1G058890.2	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G021880.1	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G101270.1	AT2G28350.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G019750.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G070620.5	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G019750.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G070620.5	AT5G25890.1	22096563
AT4G30080.1	HORVU1Hr1G017770.6	AT3G17600.1	21798944
AT4G30080.1	HORVU1Hr1G035720.2	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010670.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010690.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G033540.2	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G038630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G050990.4	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G051010.2	AT5G38420.1	21798944
AT4G30080.1	HORVU7Hr1G048050.2	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G380300.1	Wheat	nucleus	50.7	89.11
TraesCS2B01G397300.1	Wheat	nucleus	88.59	88.84
TraesCS2D01G376600.1	Wheat	nucleus	89.15	88.66
HORVU3Hr1G081710.1	Barley	cytosol	12.54	84.76
HORVU5Hr1G024100.1	Barley	cytosol	17.18	80.79
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	12.39	78.57
Os04t0519700-01	Rice	nucleus	38.59	69.9
HORVU6Hr1G058890.2	Barley	mitochondrion	61.55	57.58
GSMUA_Achr8P18930_001	Banana	nucleus	46.2	57.24
GSMUA_Achr11P...	Banana	nucleus	43.24	56.75
GSMUA_Achr4P18240_001	Banana	nucleus	48.03	56.18
KXG36152	Sorghum	nucleus	51.97	55.66
GSMUA_Achr11P...	Banana	nucleus	47.04	55.3
GSMUA_Achr5P14630_001	Banana	nucleus	42.68	54.99
GSMUA_Achr5P03960_001	Banana	nucleus	42.96	54.56
VIT_08s0040g01810.t01	Wine grape	nucleus	47.61	54.25
GSMUA_Achr5P18540_001	Banana	nucleus	39.58	54.14
CDY43553	Canola	nucleus	45.92	53.36
HORVU7Hr1G101270.1	Barley	nucleus	52.11	53.08
KXG26729	Sorghum	nucleus, plastid	53.94	53.05
CDX68620	Canola	nucleus	45.63	52.51
HORVU7Hr1G021880.1	Barley	nucleus	16.34	52.49
VIT_13s0019g04380.t01	Wine grape	nucleus	50.14	52.43
PGSC0003DMT400055522	Potato	nucleus	50.7	52.02
Solyc09g007810.2.1	Tomato	nucleus	50.7	51.87
VIT_06s0004g02750.t01	Wine grape	nucleus	51.69	51.62
Bra011162.1-P	Field mustard	nucleus	46.9	51.47
HORVU1Hr1G041770.1	Barley	nucleus	49.01	50.58
AT4G30080.1	Thale cress	nucleus	47.32	50.15
KRH22880	Soybean	nucleus	47.04	49.85
KRG95987	Soybean	nucleus	49.01	49.71
CDY15734	Canola	nucleus	47.61	49.71
KRH29907	Soybean	nucleus	48.59	49.5
KRH32480	Soybean	nucleus	48.59	49.29
Solyc11g069500.1.1	Tomato	nucleus	48.45	49.21
PGSC0003DMT400020874	Potato	nucleus	48.31	49.07
KRH25023	Soybean	nucleus	48.31	48.93
CDY04557	Canola	nucleus	47.18	48.91
KRH26435	Soybean	nucleus	48.17	48.86
Zm00001d025871_P001	Maize	nucleus	40.0	48.3
AT2G28350.1	Thale cress	nucleus	46.76	47.91
Bra011955.1-P	Field mustard	nucleus	47.46	47.8
KRH34867	Soybean	nucleus	40.99	47.55
KRG91907	Soybean	nucleus	39.3	47.05
Solyc06g075150.2.1	Tomato	nucleus	44.37	46.94
PGSC0003DMT400062489	Potato	nucleus	44.08	46.3
Bra024109.1-P	Field mustard	nucleus	44.65	45.68
Solyc10g086130.1.1	Tomato	nucleus	37.04	41.68
HORVU4Hr1G080510.1	Barley	cytosol	6.2	39.64
CDY46728	Canola	nucleus	46.48	39.1
HORVU4Hr1G031990.1	Barley	cytosol	4.08	38.67
CDY30172	Canola	nucleus	44.65	38.19
HORVU5Hr1G054640.1	Barley	cytosol	5.92	37.84
HORVU6Hr1G070410.1	Barley	cytosol	5.21	37.76
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	9.86	36.08
HORVU2Hr1G089660.8	Barley	nucleus	13.94	30.46
HORVU7Hr1G108360.1	Barley	nucleus	13.66	28.7
HORVU1Hr1G049680.1	Barley	cytosol	4.23	28.04
HORVU3Hr1G072340.2	Barley	nucleus	22.82	23.89
HORVU1Hr1G076690.6	Barley	nucleus	23.38	23.82
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	24.65	20.47
HORVU2Hr1G125740.1	Barley	nucleus	10.14	18.51

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287IVN1	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:HORVU2Hr1G089670	EnsemblPlants:HORVU2Hr1G089670.1	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF15
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000B470203	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287IVN1]

Coordinates

chrchr2H:+:640242205..640266776

Molecular Weight (calculated)

73925.1 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.328

Length

710 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXELSCP ADGEGQPRSV DAQLWLACAG SMCTVPPVGA AVYYFPQGHA EQATAAVDLS AARVPALLPC RVSAVRFMAD
101: AHSDEVFAKI RLVPLRHGDP AVDVGDAAAQ GRPQDDRPKP ASFAKTLTQS DANNGGGFSV PRFCAETIFP ALDYSSEPPV QSIVVRDVHG DEFKFRHIYR
201: GTPRRHLLTT GWSNFVNQKK LLAGDSIVFL RSDGGEVHVG VRRAKRVFCD EGHSGWDHYR GLMRGGNAGS GDAAAKGKVP AEDVVAAARL AAAGQPFEVV
301: YYPRASTPEF CVRAGAVRAA MQVQWRPGMR FKMAFETEDS SRISWFMGTV AGIHAADPSR WPQSPWRLLQ VTWDEPELLQ NVKRVCPWLV ELVSSMPNLH
401: LPSFSPPRKK PRIPSYADFP FDGQLFHPPP PPFPPNHPLA HDQLMHHSFP FFPFPDSNGA PLAGIQGARH AQFGPSFSDL HPSNLQSSLL YSGGARRPPA
501: ATDHVAPRAP RISTDLTIGT SPAREDDVRA CTPPKKAGDV KTLLLFGQAI LTEEQMKSSP VAGGCGSPNW DAEKAPNLSE GSGSGSGVIQ GSPSNNNNNN
601: TSSWRLQWFG DSGSQAAPEL GLEPGQCKVF VESDAVGRNL DLSALGSFEE LYGRMSDMFG MDRAEVRNHV LYRSAAGEVK HIGDEPFSAF VKSARRLMIL
701: ADAGSDNIGG

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.