Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G080510.1 | Barley | cytosol | 89.8 | 79.28 |
| HORVU4Hr1G031990.1 | Barley | cytosol | 60.2 | 78.67 |
| HORVU5Hr1G054640.1 | Barley | cytosol | 87.76 | 77.48 |
| HORVU1Hr1G049680.1 | Barley | cytosol | 59.18 | 54.21 |
| VIT_03s0167g00010.t01 | Wine grape | nucleus | 55.1 | 53.47 |
| VIT_00s1203g00010.t01 | Wine grape | cytosol | 55.1 | 45.38 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 33.67 | 31.43 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 28.57 | 25.0 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 34.69 | 22.52 |
| KRH10952 | Soybean | nucleus | 47.96 | 16.15 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 30.61 | 13.57 |
| HORVU3Hr1G072340.2 | Barley | nucleus | 45.92 | 6.64 |
| HORVU1Hr1G076690.6 | Barley | nucleus | 45.92 | 6.46 |
| HORVU1Hr1G087460.6 | Barley | mitochondrion, nucleus | 48.98 | 5.61 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 37.76 | 5.38 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 37.76 | 5.31 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 37.76 | 5.21 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 37.76 | 4.87 |
| HORVU7Hr1G108360.1 | Barley | nucleus | 16.33 | 4.73 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 7.14 | 2.15 |
| HORVU2Hr1G125740.1 | Barley | nucleus | 3.06 | 0.77 |
| KRH10951 | Soybean | cytosol, nucleus | 3.06 | 0.7 |
| HORVU6Hr1G026750.1 | Barley | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G070410.1 | EnsemblPlantsGene:HORVU6Hr1G070410 | Gene3D:2.40.330.10 | InterPro:DNA-bd_pseudobarrel_sf | InterPro:IPR015300 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF10 | SUPFAM:SSF101936 | UniParc:UPI000B4856E6 | UniProt:A0A287UKZ3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr6H:-:489961880..489962541
Molecular Weight (calculated)
11128.3 Da
IEP (calculated)
8.345
GRAVY (calculated)
-0.385
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MTLQPVNSET DVFPIQSLGS NAKSKHPAEY FCKNLTASDT STHGGFSVPR RATGKLFPQL DYSMQPPNQE LIVQGLHHNM WIFRHIYRGR VECCLTCF
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.