Factsheet for HORVU1Hr1G087460.6

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076690.6
HORVU1Hr1G087460.6
HORVU3Hr1G072340.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	HORVU1Hr1G076690.6	AT2G33860.1	24485461
AT2G33860.1	HORVU1Hr1G087460.6	AT2G33860.1	24485461
AT2G33860.1	HORVU3Hr1G072340.2	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G404400.1	Wheat	nucleus	79.53	92.52
TraesCS1A01G396400.1	Wheat	nucleus	78.6	91.43
TraesCS1B01G424700.1	Wheat	nucleus	79.3	91.37
Zm00001d053166_P001	Maize	nucleus	15.2	87.84
Os05t0563400-01	Rice	nucleus	61.4	73.74
EES18676	Sorghum	nucleus	60.12	69.55
Zm00001d039006_P007	Maize	nucleus	59.42	66.15
HORVU4Hr1G031990.1	Barley	cytosol	4.8	54.67
HORVU4Hr1G080510.1	Barley	cytosol	6.67	51.35
HORVU5Hr1G054640.1	Barley	cytosol	6.67	51.35
CDY17209	Canola	nucleus	34.5	49.0
HORVU6Hr1G070410.1	Barley	cytosol	5.61	48.98
Bra005465.1-P	Field mustard	nucleus	34.62	48.93
CDY27929	Canola	nucleus	34.74	48.85
CDY37679	Canola	nucleus	33.92	48.82
Bra021885.1-P	Field mustard	nucleus	31.11	48.19
AT2G33860.1	Thale cress	nucleus	33.92	47.7
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	6.2	47.32
Zm00001d006004_P001	Maize	nucleus	18.6	47.18
KRH50128	Soybean	nucleus	37.43	45.13
HORVU3Hr1G081710.1	Barley	cytosol	5.5	44.76
KRH20373	Soybean	nucleus	37.31	44.68
GSMUA_Achr4P10590_001	Banana	nucleus	36.84	44.12
KRH21341	Soybean	nucleus	37.78	43.89
VIT_10s0003g00420.t01	Wine grape	nucleus	39.88	43.77
GSMUA_Achr4P02750_001	Banana	nucleus	36.37	43.31
HORVU1Hr1G076690.6	Barley	nucleus	35.2	43.19
HORVU3Hr1G072340.2	Barley	nucleus	34.15	43.07
PGSC0003DMT400081282	Potato	nucleus	37.19	42.51
GSMUA_Achr3P31350_001	Banana	nucleus	38.95	41.99
GSMUA_Achr7P25330_001	Banana	nucleus	35.56	41.82
HORVU5Hr1G024100.1	Barley	cytosol	7.37	41.72
Solyc02g077560.2.1	Tomato	nucleus	36.37	41.63
HORVU1Hr1G049680.1	Barley	cytosol	5.15	41.12
HORVU7Hr1G021880.1	Barley	nucleus	7.25	28.05
HORVU1Hr1G041770.1	Barley	nucleus	21.17	26.31
HORVU7Hr1G101270.1	Barley	nucleus	20.7	25.39
HORVU2Hr1G089670.1	Barley	nucleus	20.47	24.65
HORVU6Hr1G058890.2	Barley	mitochondrion	21.4	24.11
HORVU7Hr1G108360.1	Barley	nucleus	8.89	22.49
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	3.16	13.92
HORVU2Hr1G089660.8	Barley	nucleus	5.03	13.23
HORVU2Hr1G125740.1	Barley	nucleus	4.8	10.54

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A287GLU1	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU1Hr1G087460	EnsemblPlants:HORVU1Hr1G087460.6	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF31
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000B485458	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287GLU1]

Coordinates

chrchr1H:-:539380120..539386124

Molecular Weight (calculated)

93893.7 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.490

Length

855 amino acids

Sequence
(BLAST)

001: TKISTHARRN RRSIDFYCAR PPLFTRTDGR TPLQSRLALA ASLSHLLFWP LPLLVAAAPR PPPPRPSRPS THTHPSFMAI AAMPRRAAPS PPXARPPRFI
101: NLFACVHPSP TVHTALRSSF SLPRMAGIDL NTVEEDEEES SAEPLLAGTG CGGDCSSQSH SHSHSQTQSG YNGQASSPVA TPPSRPSAVC LELWHACAGP
201: VAPMPRKGSV VVYLPQGHLD HLGDAPAHAA ASPAAAVPPH VFCRVVDVTL HADATTDEVY AQLSLLPENE ELVRRMREAT DDVSGGEDGE TVKQRFARMP
301: HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP HLDYNQQRPS QELVAKDLHG TEWKFRHIYR GQPRRHLLTT GWSAFVNKKK LVSGDAVLFL RGDDGELRLG
401: VRRAVQLKNG SAFPALYSQC SNLGTLANVT HAVSTKSMFQ IFYNPRLSQS EFIVPYWKFT KSISQPFSVG WRFKMRYESE DAAERRYTGI ITGTVDADPR
501: WRGSKWKCLL VRWDDDGEFR RPNRLSPWEI ELTSAASGSH LAAPTSKRMK PYLPHANPEY TVPYGGGRPD FAESAQLRKV LQGQELLGYR THDGTAVATS
601: QPCEARNLQY IDERGCSNNG SNNVLGGVPS HGVRTPLGIP YHCSGFGESQ RFQKVLQGQE VFRPYRGSLV DARMRSGGFH QQDGPYASAL LDKWRAQQQH
701: AFGYGPPAQV LPSQPSLSPP SVLMFQKADP KVSRFEFGHG HMDKNEDDWY ARFVSAEGVG RAEQASSLRP HLGSGEVIDS RVAVENTGAA PTNSCKIFGI
801: SLAEKVRARD EMVCDDGGAN YSSPTQPLKS LGNSCATVHE QRPVVGRAID VQQWI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.