Factsheet for HORVU3Hr1G072340.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076690.6
HORVU1Hr1G087460.6
HORVU3Hr1G072340.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	HORVU1Hr1G076690.6	AT2G33860.1	24485461
AT2G33860.1	HORVU1Hr1G087460.6	AT2G33860.1	24485461
AT2G33860.1	HORVU3Hr1G072340.2	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G292400.1	Wheat	nucleus	88.79	92.19
TraesCS3B01G327000.1	Wheat	nucleus	88.2	90.61
TraesCS3D01G292100.1	Wheat	plastid	90.27	88.31
Os01t0753500-01	Rice	plastid	72.71	67.44
KXG33384	Sorghum	nucleus	66.52	65.84
Zm00001d043431_P012	Maize	nucleus	65.19	63.87
Zm00001d012731_P010	Maize	nucleus	64.75	63.62
HORVU1Hr1G076690.6	Barley	nucleus	56.78	55.24
HORVU4Hr1G031990.1	Barley	cytosol	5.46	49.33
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	7.67	46.43
HORVU5Hr1G054640.1	Barley	cytosol	7.52	45.95
HORVU4Hr1G080510.1	Barley	cytosol	7.52	45.95
HORVU6Hr1G070410.1	Barley	cytosol	6.64	45.92
AT2G33860.1	Thale cress	nucleus	38.64	43.09
CDY17209	Canola	nucleus	38.05	42.86
Bra005465.1-P	Field mustard	nucleus	38.2	42.81
CDY27929	Canola	nucleus	38.2	42.6
CDY37679	Canola	nucleus	37.32	42.59
GSMUA_Achr4P10590_001	Banana	nucleus	43.81	41.6
Bra021885.1-P	Field mustard	nucleus	33.78	41.49
GSMUA_Achr4P02750_001	Banana	nucleus	42.48	40.11
HORVU3Hr1G081710.1	Barley	cytosol	6.19	40.0
KRH21341	Soybean	nucleus	41.89	38.59
HORVU1Hr1G049680.1	Barley	cytosol	6.05	38.32
KRH20373	Soybean	nucleus	39.97	37.96
KRH50128	Soybean	nucleus	39.68	37.94
HORVU5Hr1G024100.1	Barley	cytosol	8.41	37.75
VIT_10s0003g00420.t01	Wine grape	nucleus	43.22	37.61
GSMUA_Achr3P31350_001	Banana	nucleus	43.95	37.58
GSMUA_Achr7P25330_001	Banana	nucleus	40.27	37.55
Solyc02g077560.2.1	Tomato	nucleus	40.56	36.81
PGSC0003DMT400081282	Potato	nucleus	40.56	36.76
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	43.07	34.15
HORVU7Hr1G021880.1	Barley	nucleus	8.55	26.24
HORVU1Hr1G041770.1	Barley	nucleus	24.93	24.56
HORVU7Hr1G101270.1	Barley	nucleus	24.19	23.53
HORVU2Hr1G089670.1	Barley	nucleus	23.89	22.82
HORVU6Hr1G058890.2	Barley	mitochondrion	24.78	22.13
HORVU7Hr1G108360.1	Barley	nucleus	10.77	21.6
HORVU2Hr1G089660.8	Barley	nucleus	5.9	12.31
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	3.24	11.34
HORVU2Hr1G125740.1	Barley	nucleus	5.6	9.77

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A287LLS1	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:HORVU3Hr1G072340	EnsemblPlants:HORVU3Hr1G072340.2	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF13
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000B486548	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287LLS1]

Coordinates

chrchr3H:+:544891051..544896449

Molecular Weight (calculated)

73200.1 Da

IEP (calculated)

8.735

GRAVY (calculated)

-0.393

Length

678 amino acids

Sequence
(BLAST)

001: GSRGGRRRRS RGGSGAGRHG GLARTTRRWL ESDALGGING EPRKDAPAPV CRDLWHACAG PVVALPRRGS ALVYLPQAHL AAAGGGGDAP VGLPPHVACR
101: VVDVELCADP ATDEVYARLA LVAEGEVFEK NMGGGRFEGE DDMEDVDGER KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYQ QIRPSQELVA
201: KDLHGAKWRF RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALLKA FNSNSSKIHT LSAVVNSLKH RSVFHICYNP
301: RAAASEFIVP YWKFLKSLNR PFCIGMRFKI QYGSEDVNER RSGMITGINE VDPIRWTGSK WKSLLVRWED GIDCNNQNRL SPWEIEIVGG SVSIAQSLSA
401: SSSKRTKLCP QGNLDVPTLY GNGRPDSVGA DKLPRVLQGQ ELMGSGTHRV TCPPQPGGAT EFRRSDGAGF LTDTRSCMLS GPASRLPPQS SYFAYQPVGF
501: GESVRFPEVL QGQEVCQTVP LFQGMVSDTC STKGGYGLYN YMCTSSAMNG GLSSAAQGYP LSLATPPPAE AASPSQLCLA SKSNEEAGNG SQPNPLGIRK
601: APGDGAAKLG SDGRKVARTS CMLFGFSLTE KMLPTEEDCA KEGSHEADCQ NPRMLDLFGY NRATPSALHA LCAAPLGI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.