Factsheet for VIT_00s1203g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0167g00010.t01	Wine grape	nucleus	82.35	97.03
HORVU6Hr1G070410.1	Barley	cytosol	45.38	55.1
HORVU4Hr1G031990.1	Barley	cytosol	30.25	48.0
HORVU4Hr1G080510.1	Barley	cytosol	44.54	47.75
HORVU5Hr1G054640.1	Barley	cytosol	44.54	47.75
HORVU1Hr1G049680.1	Barley	cytosol	28.57	31.78
KRH10952	Soybean	nucleus	53.78	21.99
VIT_08s0040g01810.t01	Wine grape	nucleus	42.86	8.19
VIT_10s0003g00420.t01	Wine grape	nucleus	52.1	7.96
VIT_13s0019g04380.t01	Wine grape	nucleus	42.02	7.36
VIT_06s0004g02750.t01	Wine grape	nucleus	43.7	7.31
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	0.84	0.29
KRH10951	Soybean	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100853250	wikigene:100853250	EntrezGene:100855361	wikigene:100855361	MapMan:15.5.5.1	Gene3D:2.40.330.10
InterPro:B3_DNA-bd	ProteinID:CCB45329	ProteinID:CCB45329.1	InterPro:DNA-bd_pseudobarrel_sf	UniProt:F6GZE3	EMBL:FN595036
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EntrezGene:LOC100853250
wikigene:LOC100853250	EntrezGene:LOC100855361	wikigene:LOC100855361	PFAM:PF02362	PANTHER:PTHR31384	PANTHER:PTHR31384:SF68
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002108C84	ArrayExpress:VIT_00s1203g00010	EnsemblPlantsGene:VIT_00s1203g00010	EnsemblPlants:VIT_00s1203g00010.t01
RefSeq:XP_003631719	RefSeq:XP_003631719.1	RefSeq:XP_003635519	RefSeq:XP_003635519.1	:	:

Description

No Description!

Coordinates

chrUn:-:37863007..37866051

Molecular Weight (calculated)

13622.2 Da

IEP (calculated)

9.709

GRAVY (calculated)

-0.843

Length

119 amino acids

Sequence
(BLAST)

001: MTLQPLSPQE QKDAYLPAEL GVPSKQPSNY FCKTLIASDT STHGGFSVPR RAAEKVFPPL DFSQQPPAQE LIARDLHDNE WKFRHIFRGQ PKRHLLTTEK
101: ELELQRQTNA RKCSSLHRG

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.