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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_17s0000g03690.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G30080.1 VIT_17s0000g03690.t01 AT5G38420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_08s0040g01810.t01 Wine grape nucleus 62.44 68.06
GSMUA_Achr4P18240_001 Banana nucleus 60.82 68.04
GSMUA_Achr11P... Banana nucleus 53.61 67.28
GSMUA_Achr5P18540_001 Banana nucleus 51.1 66.86
VIT_06s0004g02750.t01 Wine grape nucleus 69.96 66.81
GSMUA_Achr8P18930_001 Banana nucleus 56.26 66.67
GSMUA_Achr5P03960_001 Banana nucleus 54.05 65.65
GSMUA_Achr11P... Banana nucleus 58.32 65.56
CDX68620 Canola nucleus 58.91 64.83
CDY43553 Canola nucleus 57.58 63.99
GSMUA_Achr5P14630_001 Banana nucleus 51.84 63.88
AT4G30080.1 Thale cress nucleus 63.03 63.88
HORVU4Hr1G078490.1 Barley cytosol, nucleus, plastid 10.46 63.39
Bra011162.1-P Field mustard nucleus 60.09 63.06
EER94066 Sorghum nucleus 62.3 61.39
Zm00001d014013_P002 Maize nucleus 57.88 61.02
TraesCS1A01G156600.1 Wheat nucleus 61.27 60.47
TraesCS1D01G155100.1 Wheat nucleus 61.27 60.47
KRH34867 Soybean nucleus 54.49 60.46
Os06t0685700-01 Rice nucleus 62.3 60.43
TraesCS1B01G173700.1 Wheat nucleus 61.27 60.2
KRG91907 Soybean nucleus 52.43 60.03
HORVU1Hr1G041770.1 Barley nucleus 60.82 60.03
HORVU3Hr1G081710.1 Barley cytosol 9.28 60.0
Zm00001d032683_P001 Maize nucleus 59.79 59.62
Os10t0479900-01 Rice nucleus 61.27 59.6
TraesCS7D01G436800.1 Wheat nucleus 60.97 59.57
TraesCS7B01G346700.1 Wheat nucleus 60.82 59.51
HORVU7Hr1G101270.1 Barley nucleus 60.38 58.82
EER88840 Sorghum nucleus 61.41 58.82
TraesCS7A01G446900.1 Wheat nucleus 60.53 58.63
Os02t0628600-01 Rice nucleus 58.03 57.86
Zm00001d000358_P001 Maize nucleus 59.06 57.29
HORVU5Hr1G024100.1 Barley cytosol 12.67 56.95
Zm00001d014507_P002 Maize nucleus 60.24 56.41
Bra024109.1-P Field mustard nucleus 57.58 56.34
EES05458 Sorghum nucleus 58.03 55.65
Os04t0519700-01 Rice nucleus 31.81 55.1
Zm00001d017284_P001 Maize nucleus 57.0 54.74
TraesCS6A01G222300.1 Wheat nucleus 53.17 53.72
Zm00001d051172_P001 Maize nucleus 54.79 52.32
TraesCS2B01G397300.1 Wheat nucleus 54.2 51.98
TraesCS2D01G376600.1 Wheat nucleus 54.49 51.82
HORVU2Hr1G089670.1 Barley nucleus 52.43 50.14
TraesCS6B01G258800.1 Wheat mitochondrion 54.79 49.8
CDY46728 Canola nucleus 61.12 49.17
HORVU6Hr1G058890.2 Barley mitochondrion 54.64 48.88
TraesCS6D01G212700.1 Wheat plastid 54.93 48.5
CDY30172 Canola nucleus 57.88 47.35
TraesCS2A01G380300.1 Wheat nucleus 27.84 46.78
KXG36152 Sorghum nucleus 45.21 46.3
KXG26729 Sorghum nucleus, plastid 48.6 45.71
VIT_03s0167g00010.t01 Wine grape nucleus 6.77 45.54
Zm00001d025871_P001 Maize nucleus 36.52 42.18
VIT_00s1203g00010.t01 Wine grape cytosol 7.36 42.02
HORVU7Hr1G021880.1 Barley nucleus 12.52 38.46
VIT_18s0001g04180.t01 Wine grape mitochondrion, nucleus 18.11 35.45
HORVU2Hr1G089660.8 Barley nucleus 13.4 28.0
VIT_10s0003g00420.t01 Wine grape nucleus 29.31 25.55
Protein Annotations
EntrezGene:100265118wikigene:100265118MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90
EMBL:AM471432InterPro:Auxin_respInterPro:B3_DNA-bdProteinID:CAN63853ProteinID:CAN63853.1ProteinID:CCB56178
ProteinID:CCB56178.1InterPro:DNA-bd_pseudobarrel_sfUniProt:F6HNF9EMBL:FN595998GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165
GO:GO:0007275GO:GO:0007389GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009733GO:GO:0009734GO:GO:0009987GO:GO:0048829GO:GO:0051301
InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300EntrezGene:LOC100265118wikigene:LOC100265118InterPro:PB1_dom
PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF39
SMART:SM01019SUPFAM:SSF101936TIGR:TC60532UniParc:UPI0002109E61ArrayExpress:VIT_13s0019g04380EnsemblPlantsGene:VIT_13s0019g04380
EnsemblPlants:VIT_13s0019g04380.t01unigene:Vvi.18826RefSeq:XP_002273590RefSeq:XP_002273590.1SEG:seg:
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HNF9]
Coordinates
chr13:-:5744428..5747932
Molecular Weight (calculated)
74827.5 Da
IEP (calculated)
6.886
GRAVY (calculated)
-0.404
Length
679 amino acids
Sequence
(BLAST)
001: MDPMKELDKC LDPQLWHACA GGMVHMPSLN SRVVYFPQGH AEHAYGNVDF GNPRIPPLVL CRVSAVKYLA DPESDEVYAK IRLIPLRNTE GETEDDVLMG
101: GNGIEAPEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG ETWRFRHIYR GTPRRHLLTT GWSNFVNKKN LVAGDSIVFL
201: RAENGDLCVG IRRAKRAGCG PESPSGWNPA SGNGTSPYRG YSGFLREDEN RPILTHSNAG FRGKGRVRAE SVAEAATLAA NGQPFVIVYY PRASTPEFCV
301: KASSVRAAMQ IQWCPGMKFK MAFETDDSSR ISWFMGNISS VHVNDPIRWP NSPWRLLQVT WDEPDLLQNV KRVNPWLVEL VSHVPSIHLS PFSPPRKKLR
401: LQQQSEFPLV GQIPMPSFSS NALRPSSPLC CISDNIPAGI QGARHAQFGL SSSDLHFNKL QLGLFPLGLQ QQLDQTAPPS SILSGNTMSN HENNENISCL
501: LTIGNSTQNS KKNNEIKAPY FFLFGQPILI EQQVSQSCSG DTAGISSSDG NPEKTPNFSD GSGSAFHQNG PQESSSDEGL LTWYKDHQKT NLGLETGHCK
601: VFMESEDVGR TLDLSILGSY EELYRKLANM FGIERAEMLS NVLYRDEAGI VKHIGDAPFG EFLKTARRLT ILADSAATP
Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.