Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_17s0000g03690.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G30080.1 | VIT_17s0000g03690.t01 | AT5G38420.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_08s0040g01810.t01 | Wine grape | nucleus | 62.44 | 68.06 |
GSMUA_Achr4P18240_001 | Banana | nucleus | 60.82 | 68.04 |
GSMUA_Achr11P... | Banana | nucleus | 53.61 | 67.28 |
GSMUA_Achr5P18540_001 | Banana | nucleus | 51.1 | 66.86 |
VIT_06s0004g02750.t01 | Wine grape | nucleus | 69.96 | 66.81 |
GSMUA_Achr8P18930_001 | Banana | nucleus | 56.26 | 66.67 |
GSMUA_Achr5P03960_001 | Banana | nucleus | 54.05 | 65.65 |
GSMUA_Achr11P... | Banana | nucleus | 58.32 | 65.56 |
CDX68620 | Canola | nucleus | 58.91 | 64.83 |
CDY43553 | Canola | nucleus | 57.58 | 63.99 |
GSMUA_Achr5P14630_001 | Banana | nucleus | 51.84 | 63.88 |
AT4G30080.1 | Thale cress | nucleus | 63.03 | 63.88 |
HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 10.46 | 63.39 |
Bra011162.1-P | Field mustard | nucleus | 60.09 | 63.06 |
EER94066 | Sorghum | nucleus | 62.3 | 61.39 |
Zm00001d014013_P002 | Maize | nucleus | 57.88 | 61.02 |
TraesCS1A01G156600.1 | Wheat | nucleus | 61.27 | 60.47 |
TraesCS1D01G155100.1 | Wheat | nucleus | 61.27 | 60.47 |
KRH34867 | Soybean | nucleus | 54.49 | 60.46 |
Os06t0685700-01 | Rice | nucleus | 62.3 | 60.43 |
TraesCS1B01G173700.1 | Wheat | nucleus | 61.27 | 60.2 |
KRG91907 | Soybean | nucleus | 52.43 | 60.03 |
HORVU1Hr1G041770.1 | Barley | nucleus | 60.82 | 60.03 |
HORVU3Hr1G081710.1 | Barley | cytosol | 9.28 | 60.0 |
Zm00001d032683_P001 | Maize | nucleus | 59.79 | 59.62 |
Os10t0479900-01 | Rice | nucleus | 61.27 | 59.6 |
TraesCS7D01G436800.1 | Wheat | nucleus | 60.97 | 59.57 |
TraesCS7B01G346700.1 | Wheat | nucleus | 60.82 | 59.51 |
HORVU7Hr1G101270.1 | Barley | nucleus | 60.38 | 58.82 |
EER88840 | Sorghum | nucleus | 61.41 | 58.82 |
TraesCS7A01G446900.1 | Wheat | nucleus | 60.53 | 58.63 |
Os02t0628600-01 | Rice | nucleus | 58.03 | 57.86 |
Zm00001d000358_P001 | Maize | nucleus | 59.06 | 57.29 |
HORVU5Hr1G024100.1 | Barley | cytosol | 12.67 | 56.95 |
Zm00001d014507_P002 | Maize | nucleus | 60.24 | 56.41 |
Bra024109.1-P | Field mustard | nucleus | 57.58 | 56.34 |
EES05458 | Sorghum | nucleus | 58.03 | 55.65 |
Os04t0519700-01 | Rice | nucleus | 31.81 | 55.1 |
Zm00001d017284_P001 | Maize | nucleus | 57.0 | 54.74 |
TraesCS6A01G222300.1 | Wheat | nucleus | 53.17 | 53.72 |
Zm00001d051172_P001 | Maize | nucleus | 54.79 | 52.32 |
TraesCS2B01G397300.1 | Wheat | nucleus | 54.2 | 51.98 |
TraesCS2D01G376600.1 | Wheat | nucleus | 54.49 | 51.82 |
HORVU2Hr1G089670.1 | Barley | nucleus | 52.43 | 50.14 |
TraesCS6B01G258800.1 | Wheat | mitochondrion | 54.79 | 49.8 |
CDY46728 | Canola | nucleus | 61.12 | 49.17 |
HORVU6Hr1G058890.2 | Barley | mitochondrion | 54.64 | 48.88 |
TraesCS6D01G212700.1 | Wheat | plastid | 54.93 | 48.5 |
CDY30172 | Canola | nucleus | 57.88 | 47.35 |
TraesCS2A01G380300.1 | Wheat | nucleus | 27.84 | 46.78 |
KXG36152 | Sorghum | nucleus | 45.21 | 46.3 |
KXG26729 | Sorghum | nucleus, plastid | 48.6 | 45.71 |
VIT_03s0167g00010.t01 | Wine grape | nucleus | 6.77 | 45.54 |
Zm00001d025871_P001 | Maize | nucleus | 36.52 | 42.18 |
VIT_00s1203g00010.t01 | Wine grape | cytosol | 7.36 | 42.02 |
HORVU7Hr1G021880.1 | Barley | nucleus | 12.52 | 38.46 |
VIT_18s0001g04180.t01 | Wine grape | mitochondrion, nucleus | 18.11 | 35.45 |
HORVU2Hr1G089660.8 | Barley | nucleus | 13.4 | 28.0 |
VIT_10s0003g00420.t01 | Wine grape | nucleus | 29.31 | 25.55 |
Protein Annotations
EntrezGene:100265118 | wikigene:100265118 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 |
EMBL:AM471432 | InterPro:Auxin_resp | InterPro:B3_DNA-bd | ProteinID:CAN63853 | ProteinID:CAN63853.1 | ProteinID:CCB56178 |
ProteinID:CCB56178.1 | InterPro:DNA-bd_pseudobarrel_sf | UniProt:F6HNF9 | EMBL:FN595998 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
GO:GO:0007275 | GO:GO:0007389 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
GO:GO:0009725 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0048829 | GO:GO:0051301 |
InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | EntrezGene:LOC100265118 | wikigene:LOC100265118 | InterPro:PB1_dom |
PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF39 |
SMART:SM01019 | SUPFAM:SSF101936 | TIGR:TC60532 | UniParc:UPI0002109E61 | ArrayExpress:VIT_13s0019g04380 | EnsemblPlantsGene:VIT_13s0019g04380 |
EnsemblPlants:VIT_13s0019g04380.t01 | unigene:Vvi.18826 | RefSeq:XP_002273590 | RefSeq:XP_002273590.1 | SEG:seg | : |
Description
Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F6HNF9]
Coordinates
chr13:-:5744428..5747932
Molecular Weight (calculated)
74827.5 Da
IEP (calculated)
6.886
GRAVY (calculated)
-0.404
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPMKELDKC LDPQLWHACA GGMVHMPSLN SRVVYFPQGH AEHAYGNVDF GNPRIPPLVL CRVSAVKYLA DPESDEVYAK IRLIPLRNTE GETEDDVLMG
101: GNGIEAPEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG ETWRFRHIYR GTPRRHLLTT GWSNFVNKKN LVAGDSIVFL
201: RAENGDLCVG IRRAKRAGCG PESPSGWNPA SGNGTSPYRG YSGFLREDEN RPILTHSNAG FRGKGRVRAE SVAEAATLAA NGQPFVIVYY PRASTPEFCV
301: KASSVRAAMQ IQWCPGMKFK MAFETDDSSR ISWFMGNISS VHVNDPIRWP NSPWRLLQVT WDEPDLLQNV KRVNPWLVEL VSHVPSIHLS PFSPPRKKLR
401: LQQQSEFPLV GQIPMPSFSS NALRPSSPLC CISDNIPAGI QGARHAQFGL SSSDLHFNKL QLGLFPLGLQ QQLDQTAPPS SILSGNTMSN HENNENISCL
501: LTIGNSTQNS KKNNEIKAPY FFLFGQPILI EQQVSQSCSG DTAGISSSDG NPEKTPNFSD GSGSAFHQNG PQESSSDEGL LTWYKDHQKT NLGLETGHCK
601: VFMESEDVGR TLDLSILGSY EELYRKLANM FGIERAEMLS NVLYRDEAGI VKHIGDAPFG EFLKTARRLT ILADSAATP
101: GNGIEAPEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG ETWRFRHIYR GTPRRHLLTT GWSNFVNKKN LVAGDSIVFL
201: RAENGDLCVG IRRAKRAGCG PESPSGWNPA SGNGTSPYRG YSGFLREDEN RPILTHSNAG FRGKGRVRAE SVAEAATLAA NGQPFVIVYY PRASTPEFCV
301: KASSVRAAMQ IQWCPGMKFK MAFETDDSSR ISWFMGNISS VHVNDPIRWP NSPWRLLQVT WDEPDLLQNV KRVNPWLVEL VSHVPSIHLS PFSPPRKKLR
401: LQQQSEFPLV GQIPMPSFSS NALRPSSPLC CISDNIPAGI QGARHAQFGL SSSDLHFNKL QLGLFPLGLQ QQLDQTAPPS SILSGNTMSN HENNENISCL
501: LTIGNSTQNS KKNNEIKAPY FFLFGQPILI EQQVSQSCSG DTAGISSSDG NPEKTPNFSD GSGSAFHQNG PQESSSDEGL LTWYKDHQKT NLGLETGHCK
601: VFMESEDVGR TLDLSILGSY EELYRKLANM FGIERAEMLS NVLYRDEAGI VKHIGDAPFG EFLKTARRLT ILADSAATP
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.