Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G222300.1 | Wheat | nucleus | 84.14 | 96.28 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 93.11 | 95.85 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 90.25 | 91.44 |
| Os02t0628600-01 | Rice | nucleus | 71.52 | 80.76 |
| EES05458 | Sorghum | nucleus | 70.22 | 76.27 |
| Zm00001d017284_P001 | Maize | nucleus | 68.92 | 74.96 |
| Zm00001d051172_P001 | Maize | nucleus | 67.23 | 72.71 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 59.69 | 64.29 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 49.15 | 62.27 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 45.77 | 61.43 |
| GSMUA_Achr11P... | Banana | nucleus | 47.07 | 59.93 |
| GSMUA_Achr11P... | Banana | nucleus | 41.48 | 58.96 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 53.19 | 58.85 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 39.27 | 58.19 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 42.13 | 57.96 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 41.22 | 57.53 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 45.12 | 55.7 |
| CDY43553 | Canola | nucleus | 43.82 | 55.16 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 50.85 | 54.99 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 48.5 | 54.93 |
| CDX68620 | Canola | nucleus | 43.95 | 54.78 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 48.76 | 54.51 |
| KRH32480 | Soybean | nucleus | 49.41 | 54.29 |
| Solyc09g007810.2.1 | Tomato | nucleus | 48.89 | 54.18 |
| PGSC0003DMT400055522 | Potato | nucleus | 48.5 | 53.9 |
| KRH22880 | Soybean | nucleus | 46.55 | 53.43 |
| Bra011162.1-P | Field mustard | nucleus | 44.47 | 52.86 |
| Solyc11g069500.1.1 | Tomato | nucleus | 47.98 | 52.79 |
| AT4G30080.1 | Thale cress | nucleus | 45.51 | 52.24 |
| PGSC0003DMT400020874 | Potato | nucleus | 47.46 | 52.22 |
| KRH26435 | Soybean | nucleus | 47.2 | 51.86 |
| KRG95987 | Soybean | nucleus | 47.07 | 51.71 |
| KRH25023 | Soybean | nucleus | 46.55 | 51.07 |
| KRH34867 | Soybean | nucleus | 40.57 | 50.98 |
| KRH29907 | Soybean | nucleus | 46.16 | 50.93 |
| KRG91907 | Soybean | nucleus | 39.14 | 50.76 |
| CDY15734 | Canola | nucleus | 44.47 | 50.29 |
| CDY04557 | Canola | nucleus | 44.34 | 49.78 |
| Solyc06g075150.2.1 | Tomato | nucleus | 43.43 | 49.78 |
| AT2G28350.1 | Thale cress | nucleus | 44.6 | 49.49 |
| PGSC0003DMT400062489 | Potato | nucleus | 43.43 | 49.41 |
| Bra011955.1-P | Field mustard | nucleus | 44.73 | 48.79 |
| Bra024109.1-P | Field mustard | nucleus | 43.3 | 47.98 |
| Solyc10g086130.1.1 | Tomato | nucleus | 35.76 | 43.58 |
| CDY46728 | Canola | nucleus | 46.55 | 42.42 |
| CDY30172 | Canola | nucleus | 44.34 | 41.08 |
| TraesCS2D01G577800.1 | Wheat | nucleus | 24.32 | 36.45 |
| TraesCS7D01G463000.1 | Wheat | nucleus | 14.56 | 31.64 |
| TraesCS1D01G337400.1 | Wheat | nucleus | 22.89 | 25.21 |
| TraesCS1D01G404400.1 | Wheat | nucleus | 23.67 | 24.76 |
| TraesCS3D01G245400.2 | Wheat | nucleus | 23.93 | 24.63 |
| TraesCS3D01G292100.1 | Wheat | plastid | 22.11 | 24.53 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF37 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS6D01G212700 | EnsemblPlants:TraesCS6D01G212700.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6D:+:301268010..301270520
Molecular Weight (calculated)
83022.0 Da
IEP (calculated)
8.394
GRAVY (calculated)
-0.346
Length
769 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHSTISTSR SSPTVSHSLM NGTRNKPFVV RVAAGTAPLV RCSPPLLPPI PTHRATSPSP LPENPPPRSG VGARPMITFA DLTEPAPGAE RRVDRQLWLA
101: CAGGMCTVPP VGCTVYYFPQ GHAEHALGLD AGADLSAARV PALVPCRVAA VRYVADTDTD EVFARIRLAP LGATDADGDI QDDVAAVADD EQEKPASFAK
201: TLTQSDANNG GGFSVPRYCA ETIFPRLDYA ADPPVQTVIA KDVHGTAWKF RHIYRGTPRR HLLTTGWSAF VNQKKLVAGD SIVFLRGDGG DLHVGIRRAK
301: RGFCGAEEGS LSLTGWGRYS GPMRGNASPC TRGKVRAEDV VEAARLAGSG QPFEVVYFPR ASTPEFCVRA AAVRAAMRVQ WCPGMRFKMA FETEDSSRIS
401: WFMGTVAGVQ VAHPTRWPQS PWRLLQVTWD EPDLLQNVKR VSPWLVEIVS SMPAMHLASF SPPRKKSRMP AYPEFPFEGQ LLNPSFPQNP LVHGHQHHYH
501: HTDSYHPSFP PFPDCSAPSG IQGARHSQFG PFLSDHHLTH LQSRLMYPGL RCHDHVSPAT TPFPPRISTD LTIGSSPARN GVSTTLPASA KRPNDAKPPG
601: LVLFGQTILT AQQMSRGDSA GVVSSPAAAG NSTLNWNTDK AGNASQGSGS TVVQNSGSTD NTSPERPRLF GDNSHVSELG LKPGQCKVFL ESDTVGRNLD
701: CSAMSSFEEL YDRLSETFCI EGAELRSRVL YRSAAGEVKH AGDEPFSEFI KSARRLTIVT DAGSNSTGS
101: CAGGMCTVPP VGCTVYYFPQ GHAEHALGLD AGADLSAARV PALVPCRVAA VRYVADTDTD EVFARIRLAP LGATDADGDI QDDVAAVADD EQEKPASFAK
201: TLTQSDANNG GGFSVPRYCA ETIFPRLDYA ADPPVQTVIA KDVHGTAWKF RHIYRGTPRR HLLTTGWSAF VNQKKLVAGD SIVFLRGDGG DLHVGIRRAK
301: RGFCGAEEGS LSLTGWGRYS GPMRGNASPC TRGKVRAEDV VEAARLAGSG QPFEVVYFPR ASTPEFCVRA AAVRAAMRVQ WCPGMRFKMA FETEDSSRIS
401: WFMGTVAGVQ VAHPTRWPQS PWRLLQVTWD EPDLLQNVKR VSPWLVEIVS SMPAMHLASF SPPRKKSRMP AYPEFPFEGQ LLNPSFPQNP LVHGHQHHYH
501: HTDSYHPSFP PFPDCSAPSG IQGARHSQFG PFLSDHHLTH LQSRLMYPGL RCHDHVSPAT TPFPPRISTD LTIGSSPARN GVSTTLPASA KRPNDAKPPG
601: LVLFGQTILT AQQMSRGDSA GVVSSPAAAG NSTLNWNTDK AGNASQGSGS TVVQNSGSTD NTSPERPRLF GDNSHVSELG LKPGQCKVFL ESDTVGRNLD
701: CSAMSSFEEL YDRLSETFCI EGAELRSRVL YRSAAGEVKH AGDEPFSEFI KSARRLTIVT DAGSNSTGS
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.