Factsheet for PGSC0003DMT400055522

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007810.2.1	Tomato	nucleus	98.7	98.42
VIT_08s0040g01810.t01	Wine grape	nucleus	67.77	75.28
KRH32480	Soybean	nucleus	73.55	72.71
GSMUA_Achr4P18240_001	Banana	nucleus	62.28	71.0
KRG95987	Soybean	nucleus	69.08	68.29
GSMUA_Achr11P...	Banana	nucleus	58.67	67.22
GSMUA_Achr8P18930_001	Banana	nucleus	55.49	67.02
GSMUA_Achr11P...	Banana	nucleus	52.31	66.91
GSMUA_Achr5P14630_001	Banana	nucleus	52.6	66.06
GSMUA_Achr5P03960_001	Banana	nucleus	53.32	66.01
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.55	65.18
GSMUA_Achr5P18540_001	Banana	nucleus	48.7	64.93
PGSC0003DMT400020874	Potato	nucleus	63.01	62.37
Os06t0685700-01	Rice	nucleus	63.01	62.29
HORVU1Hr1G041770.1	Barley	nucleus	61.56	61.92
TraesCS1D01G155100.1	Wheat	nucleus	61.56	61.92
EER94066	Sorghum	nucleus	61.56	61.83
TraesCS1B01G173700.1	Wheat	nucleus	61.71	61.79
TraesCS1A01G156600.1	Wheat	nucleus	61.42	61.77
TraesCS7B01G346700.1	Wheat	nucleus	61.42	61.24
TraesCS7D01G436800.1	Wheat	nucleus	61.27	61.01
Zm00001d032683_P001	Maize	nucleus	59.97	60.94
Zm00001d014013_P002	Maize	nucleus	56.65	60.87
Os10t0479900-01	Rice	nucleus	60.69	60.17
EER88840	Sorghum	nucleus	61.56	60.08
HORVU7Hr1G101270.1	Barley	nucleus	60.4	59.97
TraesCS7A01G446900.1	Wheat	nucleus	60.69	59.91
Os02t0628600-01	Rice	nucleus	57.51	58.44
Zm00001d014507_P002	Maize	nucleus	60.98	58.21
PGSC0003DMT400062489	Potato	nucleus	56.79	58.14
HORVU3Hr1G081710.1	Barley	cytosol	8.82	58.1
HORVU5Hr1G024100.1	Barley	cytosol	12.57	57.62
Zm00001d000358_P001	Maize	nucleus	57.8	57.14
EES05458	Sorghum	nucleus	57.08	55.79
Zm00001d017284_P001	Maize	nucleus	56.65	55.45
Os04t0519700-01	Rice	nucleus	31.21	55.1
TraesCS6A01G222300.1	Wheat	nucleus	51.88	53.42
TraesCS2B01G397300.1	Wheat	nucleus	53.61	52.4
Zm00001d051172_P001	Maize	nucleus	53.76	52.32
TraesCS2D01G376600.1	Wheat	nucleus	53.76	52.1
HORVU2Hr1G089670.1	Barley	nucleus	52.02	50.7
TraesCS6B01G258800.1	Wheat	mitochondrion	54.05	50.07
PGSC0003DMT400045323	Potato	cytosol	19.36	50.0
HORVU6Hr1G058890.2	Barley	mitochondrion	54.34	49.54
TraesCS6D01G212700.1	Wheat	plastid	53.9	48.5
TraesCS2A01G380300.1	Wheat	nucleus	27.6	47.28
KXG36152	Sorghum	nucleus	45.09	47.06
KXG26729	Sorghum	nucleus, plastid	47.69	45.71
PGSC0003DMT400071449	Potato	nucleus	22.98	44.04
Zm00001d025871_P001	Maize	nucleus	36.71	43.2
HORVU7Hr1G021880.1	Barley	nucleus	12.28	38.46
HORVU2Hr1G089660.8	Barley	nucleus	12.14	25.85
PGSC0003DMT400081282	Potato	nucleus	27.31	25.27
PGSC0003DMT400059999	Potato	nucleus	17.92	19.08

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	UniProt:M1BY35	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400021560
PGSC:PGSC0003DMG400021560	EnsemblPlants:PGSC0003DMT400055522	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002967456	SEG:seg	:	:

Description

Auxin response factor ARF16 [Source:PGSC_GENE;Acc:PGSC0003DMG400021560]

Coordinates

chr9:+:5682392..5686326

Molecular Weight (calculated)

75933.0 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.421

Length

692 amino acids

Sequence
(BLAST)

001: MDPKDKVKEI EKCLDSQLWH ACAGSMVQMP SISSKVFYFP QGHSEHASGN VDFRSSIRIP SYIPCKVSAI KYMADPETDE VFAKIRLIPV GRNEVEFDDD
101: GVVGMNGSDN QDKPSSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTILAK DVHGETWKFR HIYRGTPRRH LLTTGWSTFV NHKKLVAGDS
201: IVFLRAENGD LCVGIRRAKR GIGGGPETSS GWNPAGGNCM VPYGGFSSFL REDENKLMRN GNGNGNNGGN LMNKGKVKAE SVVEAANLAA SGQPFEVIYY
301: PRASTPEFCV KSSLVKSALQ IRWCSGMRFK MPFETEDSSR ISWFMGTISS VQVSDPVRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPTIHLS
401: PFSPPRKKLR LPQHPDFPLD GHLPMPAFSG NHLLGPNSPF GCLPDNTPAG MQGARHAQYG LSLSDLHFNK LHSSLFPVGF PPLDQAAAAP RRPLNIPMIS
501: KPCNNENISC LLTMGNSAHS TKKSDIGKAP QLVLFGQPIL TEQQISLSCS GDTVSTVRTG NSSSDGNADK IGNVSDGSGS ALNQRGLTER SPCDTFQSEP
601: NTEIGHCKVF MESEDVGRTL DLSLLGSYEE LCRKLANMFG IDNSEMLNHV LYRDTTGSVK QLGDEPYSDF MKTARRLTIL TDSSSDNVGI RE

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.