Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G380300.1 | Wheat | nucleus | 54.94 | 96.29 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 96.75 | 95.94 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 88.84 | 88.59 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 12.29 | 82.86 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 16.81 | 78.81 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 12.01 | 75.89 |
| Os04t0519700-01 | Rice | nucleus | 39.97 | 72.19 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 64.41 | 61.04 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 50.99 | 59.47 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 47.88 | 59.16 |
| GSMUA_Achr11P... | Banana | nucleus | 44.63 | 58.41 |
| KXG36152 | Sorghum | nucleus | 53.95 | 57.62 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 45.06 | 57.07 |
| GSMUA_Achr11P... | Banana | nucleus | 48.59 | 56.95 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 41.67 | 56.84 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 43.93 | 56.44 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 49.01 | 55.7 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 54.24 | 55.33 |
| KXG26729 | Sorghum | nucleus, plastid | 55.65 | 54.57 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 51.98 | 54.2 |
| CDY43553 | Canola | nucleus | 46.61 | 54.01 |
| Solyc09g007810.2.1 | Tomato | nucleus | 52.82 | 53.89 |
| PGSC0003DMT400055522 | Potato | nucleus | 52.4 | 53.61 |
| CDX68620 | Canola | nucleus | 46.61 | 53.48 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 53.25 | 53.02 |
| Bra011162.1-P | Field mustard | nucleus | 47.74 | 52.24 |
| KRH32480 | Soybean | nucleus | 51.13 | 51.71 |
| KRG95987 | Soybean | nucleus | 50.85 | 51.43 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 50.14 | 51.37 |
| KRH29907 | Soybean | nucleus | 50.14 | 50.93 |
| AT4G30080.1 | Thale cress | nucleus | 48.16 | 50.9 |
| KRH22880 | Soybean | nucleus | 48.02 | 50.75 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 15.82 | 50.68 |
| Solyc11g069500.1.1 | Tomato | nucleus | 49.86 | 50.5 |
| PGSC0003DMT400020874 | Potato | nucleus | 49.72 | 50.36 |
| KRH25023 | Soybean | nucleus | 49.86 | 50.36 |
| CDY15734 | Canola | nucleus | 48.16 | 50.15 |
| KRH26435 | Soybean | nucleus | 49.44 | 50.0 |
| CDY04557 | Canola | nucleus | 48.31 | 49.93 |
| Zm00001d025871_P001 | Maize | nucleus | 41.1 | 49.49 |
| KRH34867 | Soybean | nucleus | 42.66 | 49.35 |
| KRG91907 | Soybean | nucleus | 41.1 | 49.07 |
| AT2G28350.1 | Thale cress | nucleus | 48.02 | 49.06 |
| Bra011955.1-P | Field mustard | nucleus | 48.73 | 48.94 |
| Solyc06g075150.2.1 | Tomato | nucleus | 45.2 | 47.69 |
| PGSC0003DMT400062489 | Potato | nucleus | 44.92 | 47.04 |
| Bra024109.1-P | Field mustard | nucleus | 46.05 | 46.97 |
| Solyc10g086130.1.1 | Tomato | nucleus | 38.14 | 42.79 |
| CDY46728 | Canola | nucleus | 47.88 | 40.17 |
| CDY30172 | Canola | nucleus | 45.9 | 39.16 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 14.12 | 30.77 |
| TraesCS3B01G273400.2 | Wheat | nucleus | 25.71 | 25.78 |
| TraesCS3B01G327000.1 | Wheat | nucleus | 22.88 | 24.55 |
| TraesCS1B01G347900.2 | Wheat | nucleus | 24.15 | 24.5 |
| TraesCS1B01G424700.1 | Wheat | nucleus | 25.28 | 24.12 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF15 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS2B01G397300 | EnsemblPlants:TraesCS2B01G397300.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2B:-:563921743..563924100
Molecular Weight (calculated)
76217.7 Da
IEP (calculated)
6.843
GRAVY (calculated)
-0.333
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTFTELSCP AGGGGGGEDA PRSVDSQLWL ACAGSMCTVP PVGAAVYYFP QGHAEQAAGA VDLSAARVPA FLPCRVSAVR FMADPHSDEV FAKIRLVPLR
101: QGDPAVDVGD AAAEGRAQDD RPKPASFAKT LTQSDANNGG GFSVPRFCAE TIFPPLDYSS EPPVQNIFVK DVHGDEFKFR HIYRGTPRRH LLTTGWSNFV
201: NQKKLLAGDS IVFLRSEGGD VHVGIRRAKR VFCDEGHSGW DHYRGLMRGN ASSGDGGASA KGKVPAEDVV AAARMAATGQ PFEVVYYPRA STPEFCVRAG
301: AVRAAMQVQW CPGMRFKMAF ETEDSSRISW FMGTVAGIHA ADPSRWPQSP WRLLQVTWDE PELLQNVKRV CPWLVELVSS MPNLHLPSFS PPRKKPRIPS
401: YADFPFEGQL FHPPPPPFPP NHHHHHQQDQ LLHHSFPFFP FPDSNGAPLA GIQGARHAQF GPSFSDLHLS NLQSSLLYAG GVRRPAADHV APRAPRTIST
501: DLTIGTSPAR EDDNITTRAP TKKKAGDVVK PAPTLLLFGQ AILTEEQMKS SSAGGEAATS PVAGGCGSPN WDAEKAPNLS EGSGSGSGVI QGSPSNNNTS
601: SWRLQWFGDS SGQAAPELGL EPGQCKVFVE SDAVGRNLDL SALGSFEELY SRMSEMFGME CAELRNHVLY RSAAGEVKHI GDEPFSAFVK SARRLTILTD
701: AGSDNIGG
101: QGDPAVDVGD AAAEGRAQDD RPKPASFAKT LTQSDANNGG GFSVPRFCAE TIFPPLDYSS EPPVQNIFVK DVHGDEFKFR HIYRGTPRRH LLTTGWSNFV
201: NQKKLLAGDS IVFLRSEGGD VHVGIRRAKR VFCDEGHSGW DHYRGLMRGN ASSGDGGASA KGKVPAEDVV AAARMAATGQ PFEVVYYPRA STPEFCVRAG
301: AVRAAMQVQW CPGMRFKMAF ETEDSSRISW FMGTVAGIHA ADPSRWPQSP WRLLQVTWDE PELLQNVKRV CPWLVELVSS MPNLHLPSFS PPRKKPRIPS
401: YADFPFEGQL FHPPPPPFPP NHHHHHQQDQ LLHHSFPFFP FPDSNGAPLA GIQGARHAQF GPSFSDLHLS NLQSSLLYAG GVRRPAADHV APRAPRTIST
501: DLTIGTSPAR EDDNITTRAP TKKKAGDVVK PAPTLLLFGQ AILTEEQMKS SSAGGEAATS PVAGGCGSPN WDAEKAPNLS EGSGSGSGVI QGSPSNNNTS
601: SWRLQWFGDS SGQAAPELGL EPGQCKVFVE SDAVGRNLDL SALGSFEELY SRMSEMFGME CAELRNHVLY RSAAGEVKHI GDEPFSAFVK SARRLTILTD
701: AGSDNIGG
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.