Factsheet for TraesCS3D01G245400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G334900.1
TraesCS1A01G396400.1
TraesCS1B01G347900.2
TraesCS1B01G424700.1
TraesCS1D01G337400.1
TraesCS1D01G404400.1
TraesCS3A01G246000.1
TraesCS3A01G292400.1
TraesCS3B01G273400.2
TraesCS3B01G327000.1
TraesCS3D01G245400.2
TraesCS3D01G292100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	TraesCS1A01G334900.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1A01G396400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G347900.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G424700.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G337400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G404400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G246000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G292400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G273400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G327000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G245400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G292100.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G273400.2	Wheat	nucleus	89.56	94.76
TraesCS3A01G246000.1	Wheat	nucleus	84.2	94.44
Os01t0670800-02	Rice	nucleus	71.75	74.65
EES03412	Sorghum	nucleus	65.06	69.23
Zm00001d043922_P001	Maize	nucleus	65.46	69.07
TraesCS1D01G404400.1	Wheat	nucleus	59.3	60.27
CDY37679	Canola	nucleus	37.08	46.63
Bra021885.1-P	Field mustard	nucleus	34.0	46.01
GSMUA_Achr4P10590_001	Banana	nucleus	43.51	45.52
CDY17209	Canola	nucleus	36.68	45.51
Bra005465.1-P	Field mustard	nucleus	36.81	45.45
AT2G33860.1	Thale cress	nucleus	36.95	45.39
CDY27929	Canola	nucleus	36.68	45.07
GSMUA_Achr4P02750_001	Banana	nucleus	42.97	44.71
TraesCS1D01G337400.1	Wheat	nucleus	41.37	44.27
GSMUA_Achr7P25330_001	Banana	nucleus	42.97	44.15
KRH50128	Soybean	nucleus	41.77	44.01
KRH20373	Soybean	nucleus	41.5	43.42
TraesCS3D01G292100.1	Wheat	plastid	40.03	43.15
VIT_10s0003g00420.t01	Wine grape	nucleus	44.71	42.88
GSMUA_Achr3P31350_001	Banana	nucleus	45.25	42.62
KRH21341	Soybean	nucleus	41.23	41.85
Solyc02g077560.2.1	Tomato	nucleus	40.96	40.96
PGSC0003DMT400081282	Potato	nucleus	40.96	40.91
TraesCS2D01G577800.1	Wheat	nucleus	18.74	27.29
TraesCS1D01G155100.1	Wheat	nucleus	24.63	26.74
TraesCS7D01G436800.1	Wheat	nucleus	24.63	26.47
TraesCS2D01G376600.1	Wheat	nucleus	24.36	25.49
TraesCS6D01G212700.1	Wheat	plastid	24.63	23.93
TraesCS7D01G463000.1	Wheat	nucleus	10.71	22.6

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF31	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS3D01G245400	EnsemblPlants:TraesCS3D01G245400.2	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:341503596..341512281

Molecular Weight (calculated)

82051.7 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.440

Length

747 amino acids

Sequence
(BLAST)

001: MIGIDLNTVE GDEEEGGPSA EPPRGTVCLE LWHACAGPVG PLPRKGSAVV YLSEGHLEYI GEAAGAVAAV PPHVFCRVVD VNLQVRARAR GLVLVLYGVR
101: RDHNVFEVLT DRACSLQADP ATDEVYAQVS LVVDNEEAKR RMRQGESEEA CEGDGEDTDA AKRRARMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL
201: DYNLQRPSQE LVAKDLHGTE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV SGDAVLFLRG EDGVLRLGVR RAAQLKNVSP VPALFNQDSS LSSLGNVAQA
301: VAVKSIFHIY YNPRLCESEF IVPYWKFMRS FSQPSSVGMR FKMKYENEDA SERRSTGTIT GSRESDPKSH GSKWKCLVVR WDDDVECRRP NRVSPWEIEL
401: TGSVSGSHLS SPHSKRLKPC LPQVNPDMLL PTILAGGSVS SDFAESARFH KVLQGQELLG SKAHDGTVDS ASDASQASEA RNFQYSDDRN CSINMSNIPG
501: VPGLGARTPP ENHGFSYHCS GFGESQRFQK VLQGQEVFRP YEGGTSSDAV IRGSSFCQPD GNYTSGATYK WLTSQGYNYR GPVTPAMPQA SSPLSVLMFP
601: QTSSKIHGFE YVCRSLDKDD NIRHVTVNTT QDMGRTSHTL PLWPHLVSGK AIASCTGTKR LHSISSAEHE PNDKDVHTNG CKIFGISLTQ KVRVCDEVEC
701: SSANCDFQLQ PLKPQMSKSL GNSCATVHEQ RPAVGMVVDL SAVDTMI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.