Factsheet for TraesCS2D01G577800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G567300.1	Wheat	nucleus	96.3	95.92
HORVU2Hr1G125740.1	Barley	nucleus	47.76	62.98
EES13156	Sorghum	nucleus	56.73	56.18
Zm00001d002929_P001	Maize	nucleus	54.78	54.78
Os04t0690600-01	Rice	plastid	53.02	51.42
Zm00001d026687_P001	Maize	nucleus	44.25	49.13
Zm00001d030803_P001	Maize	nucleus	28.27	42.65
Zm00001d030801_P001	Maize	nucleus	36.06	41.48
Zm00001d026694_P001	Maize	nucleus	28.46	39.89
Solyc11g013480.1.1	Tomato	nucleus	26.12	39.18
GSMUA_Achr9P29480_001	Banana	nucleus	32.94	37.72
PGSC0003DMT400071449	Potato	nucleus	26.51	37.67
KRH16622	Soybean	mitochondrion	9.16	35.61
Bra003665.1-P	Field mustard	nucleus	36.84	34.62
CDX88392	Canola	nucleus	35.67	34.53
CDX68039	Canola	nucleus	36.65	34.5
CDX79239	Canola	nucleus	36.45	34.38
Bra015651.1-P	Field mustard	nucleus	36.06	33.88
TraesCS7D01G463000.1	Wheat	nucleus	23.0	33.33
KRH64757	Soybean	plastid	34.7	31.67
GSMUA_Achr6P18900_001	Banana	plastid	25.34	31.63
KRH18828	Soybean	nucleus	33.92	31.58
AT1G77850.2	Thale cress	nucleus	34.31	29.53
KRH16623	Soybean	nucleus	21.25	28.24
TraesCS7D01G436800.1	Wheat	nucleus	38.21	28.2
GSMUA_Achr10P...	Banana	nucleus	27.29	28.0
TraesCS1D01G155100.1	Wheat	nucleus	36.45	27.18
TraesCS2D01G376600.1	Wheat	nucleus	36.26	26.05
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	16.96	25.07
ATMG00940.1	Thale cress	cytosol	7.8	24.39
TraesCS6D01G212700.1	Wheat	plastid	36.45	24.32
TraesCS3D01G292100.1	Wheat	plastid	25.93	19.19
TraesCS3D01G245400.2	Wheat	nucleus	27.29	18.74
TraesCS1D01G404400.1	Wheat	nucleus	26.32	18.37
TraesCS1D01G337400.1	Wheat	nucleus	23.98	17.62

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF19	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS2D01G577800	EnsemblPlants:TraesCS2D01G577800.1	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:640997725..641002356

Molecular Weight (calculated)

55346.4 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.318

Length

513 amino acids

Sequence
(BLAST)

001: MADAPPPATP APLDRDVWLA CATPLSRVPA VGSQVYYFPH GHSEQCPAPP RAPAHSLFPC TVAAVRLFAD PRTDEPFAAV DLVPGPHRDP APALPDADAD
101: AATGFRYYAK QLTQSDANNG GGFSVPRFCA ELVFPPLDFE ADPPVQRLRM TDPLGRGWDF RHIYRGTPRR HLLTTGWSKF VNAKLLVAGD AVVFMRRADG
201: ELLAGIRRAP RYPAVSQQGA ERRPRNARAR VPPEEVDEAV RLAAEGAPFT VTYYPRQGAG EFVVPKQEVE DALVGAWAPG VQVRMKFLGA EERRSEWVNG
301: IVKAVDPSIW RMLEIDWDES VVGSLRNRHV NAWQVELVGY PPILKKLKIS ETILPPMCSG DVSVADPLLG PDCENMVMLL GSPIPAGMQG ARHIGLTELP
401: SPSPTVLTTK QFFPPSSSGG SSEVVNPEAG SPPNNSVNMR PSEERRSIQL FGATITSPVQ SATNGSSEEV SQAPDAAVDG TAHEDACATS LLDCQLTIGK
501: DDGHDRDGSK QQA

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.