CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68039	Canola	nucleus	96.32	96.15
Bra003665.1-P	Field mustard	nucleus	95.96	95.6
CDX88392	Canola	nucleus	72.61	74.53
AT1G77850.2	Thale cress	nucleus	73.53	67.11
KRH16622	Soybean	mitochondrion	14.34	59.09
KRH18828	Soybean	nucleus	49.82	49.18
PGSC0003DMT400071449	Potato	nucleus	32.35	48.75
Solyc11g013480.1.1	Tomato	nucleus	30.15	47.95
GSMUA_Achr9P29480_001	Banana	nucleus	37.68	45.76
KRH64757	Soybean	plastid	46.51	45.02
KRH16623	Soybean	nucleus	31.62	44.56
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	25.0	39.19
GSMUA_Achr6P18900_001	Banana	plastid	29.41	38.93
TraesCS2D01G577800.1	Wheat	nucleus	34.38	36.45
TraesCS2A01G567300.1	Wheat	nucleus	34.38	36.31
GSMUA_Achr10P...	Banana	nucleus	31.25	34.0
EES13156	Sorghum	nucleus	32.35	33.98
Zm00001d002929_P001	Maize	nucleus	31.99	33.92
CDX81024	Canola	cytosol	4.23	33.33
CDY43553	Canola	nucleus	36.76	32.73
CDX68620	Canola	nucleus	36.95	32.58
CDY15734	Canola	nucleus	38.6	30.88
CDY04557	Canola	nucleus	38.79	30.8
Os04t0690600-01	Rice	plastid	29.78	30.62
Zm00001d026687_P001	Maize	nucleus	25.55	30.09
Zm00001d030803_P001	Maize	nucleus	18.01	28.82
Zm00001d026694_P001	Maize	nucleus	18.93	28.14
CDX83839	Canola	mitochondrion	5.33	27.62
Zm00001d030801_P001	Maize	nucleus	22.61	27.58
HORVU7Hr1G108360.1	Barley	nucleus	17.1	27.51
TraesCS7D01G463000.1	Wheat	nucleus	17.28	26.55
CDY46728	Canola	nucleus	37.13	23.93
TraesCS7A01G475700.1	Wheat	nucleus	15.44	22.64
TraesCS7A01G475600.1	Wheat	nucleus	15.44	22.46
CDY37679	Canola	nucleus	24.45	22.39
CDY30172	Canola	nucleus	33.82	22.17
CDY17209	Canola	nucleus	24.45	22.09
CDY27929	Canola	nucleus	24.45	21.88
HORVU2Hr1G125740.1	Barley	nucleus	13.79	19.28
Os07t0183700-00	Rice	mitochondrion	16.18	16.79
Os07t0183350-00	Rice	extracellular	17.1	12.2
Os07t0183100-00	Rice	nucleus	6.07	9.22
Os07t0183200-01	Rice	nucleus	0.92	1.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	GO:A0A078CT74	InterPro:Auxin_resp	InterPro:B3_DNA-bd
EnsemblPlants:CDX79239	ProteinID:CDX79239	ProteinID:CDX79239.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00131843001
InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EDCF28	SEG:seg	:

Description

BnaC06g20640D

Coordinates

chrLK031817:+:569024..571149

Molecular Weight (calculated)

59859.1 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.353

Length

544 amino acids

Sequence
(BLAST)

001: MSPPPPATAD FLREVDPQIW RACAGASVQI PSLYSRVYYF PQGHVEHSCP SSLISSLSTA PVPCVVSAVE LLPDPITDEV FAHLALQPIS PEHFSPSNFS
101: GFGSDDDENN NSNSKVVTFA KILTPSDANN GGGFSVPRYC ADSVFPPLDF HADPPVQKLF ITDIHGVVWD FRHIYRGTPR RHLLTTGWSK FVNGKKLIAG
201: DSVVFMRKSV DEMFIGVRRA PNSNHGDEYY GGGKKGFRRI GMGKLTAEAV SEAINKAVQG YPFEVVYYPT AGWSDFVVRA EDVEVSMAGY WSPGTRVKMA
301: METEDSSRVT WFQGVVSSRF QETGLWKQLQ QITWDEPEIL QNLKRVNPWQ VEVVANSSQL LAIYPPTKRL KHSNSASGFL SGEGGEMLYS GRGQQAVDPS
401: PYLFSYTTFP AGMQGARHYE FGSFNSTGFI GENTPQLCTN NFFNPLPGLR KISTEMMNYG SPLSDDLSPN SNTTNLSSGN EQVGNRGHAV RVNSIQLFGQ
501: IINVQELTES GLAEGLYEED GSKESSDNEV VNETQLSLTY AQGM

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.