Factsheet for Zm00001d030801_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030803_P001	Maize	nucleus	66.14	86.76
Zm00001d026687_P001	Maize	nucleus	50.45	48.7
Zm00001d026694_P001	Maize	nucleus	38.56	46.99
EES13156	Sorghum	nucleus	51.79	44.59
Zm00001d002929_P001	Maize	nucleus	50.9	44.25
TraesCS2D01G577800.1	Wheat	nucleus	41.48	36.06
TraesCS2A01G567300.1	Wheat	nucleus	41.48	35.92
Os04t0690600-01	Rice	plastid	39.91	33.65
KRH16622	Soybean	mitochondrion	8.97	30.3
Solyc11g013480.1.1	Tomato	nucleus	21.97	28.66
Zm00001d053166_P001	Maize	nucleus	9.42	28.38
Zm00001d003011_P001	Maize	nucleus	12.56	27.86
PGSC0003DMT400071449	Potato	nucleus	22.2	27.42
GSMUA_Achr9P29480_001	Banana	nucleus	23.77	23.66
Bra003665.1-P	Field mustard	nucleus	28.25	23.08
CDX88392	Canola	nucleus	27.35	23.02
CDX68039	Canola	nucleus	28.03	22.94
HORVU2Hr1G125740.1	Barley	nucleus	19.96	22.88
GSMUA_Achr6P18900_001	Banana	plastid	20.85	22.63
CDX79239	Canola	nucleus	27.58	22.61
ATMG00940.1	Thale cress	cytosol	8.3	22.56
Bra015651.1-P	Field mustard	nucleus	27.35	22.34
GSMUA_Achr10P...	Banana	nucleus	23.99	21.4
KRH64757	Soybean	plastid	26.91	21.35
KRH18828	Soybean	nucleus	26.01	21.05
AT1G77850.2	Thale cress	nucleus	27.35	20.47
Zm00001d014013_P002	Maize	nucleus	29.15	20.19
Zm00001d051172_P001	Maize	nucleus	30.72	19.27
Zm00001d017284_P001	Maize	nucleus	30.27	19.09
Zm00001d025871_P001	Maize	nucleus	24.89	18.88
Zm00001d032683_P001	Maize	nucleus	28.48	18.65
Zm00001d000358_P001	Maize	nucleus	28.48	18.14
KRH16623	Soybean	nucleus	15.47	17.88
Zm00001d014507_P002	Maize	nucleus	28.92	17.79
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	13.23	17.0
Zm00001d006004_P001	Maize	nucleus	11.88	15.73
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	9.19	14.59
Zm00001d043922_P001	Maize	nucleus	22.2	13.98
Zm00001d012731_P010	Maize	nucleus	21.3	13.77
Zm00001d043431_P012	Maize	nucleus	21.3	13.73
Zm00001d039006_P007	Maize	nucleus	21.97	12.76
Zm00001d038698_P001	Maize	nucleus	19.28	12.65

Protein Annotations

EntrezGene:100382422	Gene3D:2.40.330.10	MapMan:35.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EMBL:BT064253
UniProt:C0P7I4	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
EMBL:KJ726950	ProteinID:ONM01563.1	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF19	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0001948F0A	EnsemblPlantsGene:Zm00001d030801	EnsemblPlants:Zm00001d030801_P001
EnsemblPlants:Zm00001d030801_T001	SEG:seg	:	:	:	:

Description

ARF-transcription factor 33Auxin response factor 17

Coordinates

chr1:-:160336523..160338525

Molecular Weight (calculated)

48731.4 Da

IEP (calculated)

8.663

GRAVY (calculated)

-0.484

Length

446 amino acids

Sequence
(BLAST)

001: MATQQPLPPA DGVGDNTVDR DVWLACAAPF SRIPTVGDEV YYFPDGHIEQ HQHLSAAPLP AQDRFHCTVT DVSLGVDDKT DEVFAKISLR PRPGRAAAPP
101: PGPGGSSNSP APAPGPPQKL RYFTKDLSQT DVYAKFRIPL ENEHVLPIPK VETDGADQQR VQRQDVVMRD TRGKSWRFSE TYRVNPSKEH SLGTGWLDFA
201: KAKRLAAGDK IVFMRRPNGD LIVGVRRLHV PRYRPFDFQG PAQDVMEAVR LAAAGRPFTV TYFPRQAAVE FIVPRSEVDD ALATSWEPGA VVRMEVMEDE
301: NRQHTVWVHG RVNAIRQNIW RMLEIIWGVD PPLATTRSVN AWQVASLPPL ATTGRSVIRS ESESQAQSPS SSTRASRHTD SGPSATPFSA TPPRTISIPS
401: ASPPNNPVSL SPLQNVKTIK LFGETISVDG GGGGGSEQVN RAPPSS

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.