Factsheet for TraesCS2A01G567300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G577800.1	Wheat	nucleus	95.92	96.3
HORVU2Hr1G125740.1	Barley	nucleus	47.57	62.98
EES13156	Sorghum	nucleus	55.73	55.41
Zm00001d002929_P001	Maize	nucleus	53.4	53.61
Os04t0690600-01	Rice	plastid	52.62	51.23
Zm00001d026687_P001	Maize	nucleus	43.69	48.7
Zm00001d030803_P001	Maize	nucleus	27.96	42.35
Zm00001d030801_P001	Maize	nucleus	35.92	41.48
Solyc11g013480.1.1	Tomato	nucleus	26.21	39.47
Zm00001d026694_P001	Maize	nucleus	27.96	39.34
PGSC0003DMT400071449	Potato	nucleus	26.6	37.95
GSMUA_Achr9P29480_001	Banana	nucleus	32.43	37.28
KRH16622	Soybean	mitochondrion	9.13	35.61
Bra003665.1-P	Field mustard	nucleus	36.7	34.62
CDX68039	Canola	nucleus	36.5	34.5
CDX79239	Canola	nucleus	36.31	34.38
CDX88392	Canola	nucleus	35.34	34.34
Bra015651.1-P	Field mustard	nucleus	35.73	33.7
KRH64757	Soybean	plastid	34.76	31.85
KRH18828	Soybean	nucleus	33.98	31.76
GSMUA_Achr6P18900_001	Banana	plastid	24.85	31.14
AT1G77850.2	Thale cress	nucleus	33.98	29.36
TraesCS7A01G446900.1	Wheat	nucleus	38.84	28.53
KRH16623	Soybean	nucleus	21.16	28.24
TraesCS7A01G475700.1	Wheat	nucleus	20.0	27.76
GSMUA_Achr10P...	Banana	nucleus	26.8	27.6
TraesCS7A01G475600.1	Wheat	nucleus	20.0	27.54
TraesCS1A01G156600.1	Wheat	nucleus	36.5	27.33
TraesCS6A01G222300.1	Wheat	nucleus	35.15	26.93
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	16.89	25.07
ATMG00940.1	Thale cress	cytosol	7.77	24.39
TraesCS3A01G246000.1	Wheat	nucleus	26.99	20.87
TraesCS3A01G292400.1	Wheat	nucleus	25.24	19.91
TraesCS1A01G396400.1	Wheat	nucleus	26.21	18.37
TraesCS1A01G334900.1	Wheat	nucleus	24.27	17.68
TraesCS2A01G380300.1	Wheat	nucleus	10.68	13.61

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF19	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS2A01G567300	EnsemblPlants:TraesCS2A01G567300.1	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:766151862..766156384

Molecular Weight (calculated)

55852.0 Da

IEP (calculated)

5.923

GRAVY (calculated)

-0.345

Length

515 amino acids

Sequence
(BLAST)

001: MADAPPPATP APLDRDVWLA CATPLSRVPV VGSQVYYFPH GHSEQCPAPP RAPAHNLFPC TVAAVRFFAD PKTDEPFATV DLVPGPHRDP ALHLPDAHAH
101: ADAATGFRYY AKQLTQSDAN NGGGFSVPRF CAELVFPPLD FEADPPVQRL RMTDPLGRGW DFRHIYRGTP RRHLLTTGWS KFVNAKLLVA GDAVVFMRRA
201: DGELLAGIRR APRYPAVSQQ GAERRPRNAR ARVPPEEVDE AVRLAAEGAP FTVTYYPRQG AGEFVVPKQE VEDALVGAWA PGVQVRMKFL DAEERRSEWV
301: NGIVKAVDPS IWRMLEIDWD ESVVGSLRNR HVNAWQVELV GYPPILKKLK ISETTLPPMC SGDVGMADPL LGPDCENMVM LLGSPMPAGM QGARHIGLTE
401: LPSSSPTVLT TKQFFPPSSS GGSSEVVNPE AGSPPNNSVN MRPSEERRSI QLFGATITSP VQSATNGSSE EVSQAPDAAV DGTAHEYASA TSLLDCQLTI
501: GKDDGHDRNA SKQEA

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.