Factsheet for Os04t0690600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G577800.1	Wheat	nucleus	51.42	53.02
TraesCS2A01G567300.1	Wheat	nucleus	51.23	52.62
EES13156	Sorghum	nucleus	47.83	48.84
Zm00001d002929_P001	Maize	nucleus	46.88	48.34
Zm00001d026687_P001	Maize	nucleus	39.32	45.02
Zm00001d030803_P001	Maize	nucleus	27.79	43.24
Zm00001d030801_P001	Maize	nucleus	33.65	39.91
Zm00001d026694_P001	Maize	nucleus	27.6	39.89
Solyc11g013480.1.1	Tomato	nucleus	24.76	38.3
PGSC0003DMT400071449	Potato	nucleus	24.2	35.46
Os04t0519700-01	Rice	nucleus	25.52	34.44
GSMUA_Achr9P29480_001	Banana	nucleus	28.92	34.15
HORVU2Hr1G125740.1	Barley	nucleus	24.76	33.68
KRH16622	Soybean	mitochondrion	8.32	33.33
CDX88392	Canola	nucleus	30.81	30.75
KRH18828	Soybean	nucleus	31.19	29.95
CDX79239	Canola	nucleus	30.62	29.78
GSMUA_Achr6P18900_001	Banana	plastid	23.06	29.68
Bra003665.1-P	Field mustard	nucleus	30.62	29.67
CDX68039	Canola	nucleus	30.43	29.54
Bra015651.1-P	Field mustard	nucleus	30.43	29.49
KRH64757	Soybean	plastid	30.62	28.83
GSMUA_Achr10P...	Banana	nucleus	25.52	27.0
KRH16623	Soybean	nucleus	19.47	26.68
AT1G77850.2	Thale cress	nucleus	29.87	26.51
Os02t0628600-01	Rice	nucleus	33.08	25.7
Os06t0685700-01	Rice	nucleus	33.08	25.0
Os10t0479900-01	Rice	nucleus	31.95	24.21
Os07t0183700-00	Rice	mitochondrion	22.12	22.33
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	13.8	21.04
ATMG00940.1	Thale cress	cytosol	6.43	20.73
Os05t0563400-01	Rice	nucleus	23.63	17.56
Os07t0183350-00	Rice	extracellular	24.57	17.06
Os01t0753500-01	Rice	plastid	23.44	16.96
Os01t0670800-02	Rice	nucleus	22.5	16.57
Os05t0515400-01	Rice	nucleus	19.47	16.56
Os07t0183100-00	Rice	nucleus	10.59	15.64
Os07t0183200-01	Rice	nucleus	2.84	3.69

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	EntrezGene:9269399	EMBL:AK109449	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ProteinID:BAF16267.1	ProteinID:BAS91774.1	ProteinID:CAE01808.2	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os04g0690600	EnsemblPlants:Os04t0690600-01	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF19	UniProt:Q7XSS9	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI00001B0DFE	RefSeq:XP_015634416.1	SEG:seg	:	:	:

Description

AUXIN RESPONSE FACTOR 13Similar to Auxin response factor 13. (Os04t0690600-01)

Coordinates

chr4:-:35329565..35333095

Molecular Weight (calculated)

57226.6 Da

IEP (calculated)

5.573

GRAVY (calculated)

-0.350

Length

529 amino acids

Sequence
(BLAST)

001: MARPPAATAP PPPPPPPPPP PPPIDRLVWL ACAAPLSRIP VVGTQVSYFP EGHAEQCPAP LPDPLPSAHR FFLCTITAVD LSADTTTGEP YATISLLPLR
101: HDAPAPAPAP APAAAELAEA ESQEFRYYAK QLTQSDANNG GGFSVPRLCA DHIFPALNLD DDPPVQSLTM GDLQGDSWEF RHIYRGTPRR HLLTTGWSKF
201: VNAKQLVAGD TVVFMWCGAP APERKLLVGV RRAARYSGES ACNARGRVQP QEVMEAVRLA AEQAAFRVTY YPRHGAGEFV VPRVEVDKGL TTPWRCGMQV
301: RAQVMEAEDT RRLAWLNGTL TNLRHQQIWR TLEVEWDASA ASSSMKNRFV NPWQVQPVDF PPLPMGLKIS NNNISAPVCN GDSLLVPPIL MHPQPQPPAD
401: IQGARHNNGH AYADIPSSST PSMVRTQQLF PRDLQILVPH TDIVTPQNGS PPDNPVNTPL SASDGMKTIQ LFGVTITSPV QGDTNGAFAS AQVNQVPEGV
501: DDETATEEAS DTSLPDSLTN GHNQDGARL

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.