Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65065 | Canola | nucleus | 99.55 | 99.55 |
| Bra035427.1-P | Field mustard | nucleus | 99.09 | 98.5 |
| AT1G59750.1 | Thale cress | nucleus | 94.1 | 93.53 |
| CDY27291 | Canola | nucleus | 86.99 | 92.89 |
| KRH26266 | Soybean | nucleus | 69.89 | 69.47 |
| VIT_12s0035g01800.t01 | Wine grape | nucleus | 70.95 | 69.17 |
| KRH06026 | Soybean | nucleus | 69.59 | 69.17 |
| Solyc01g103050.2.1 | Tomato | nucleus | 67.32 | 68.04 |
| PGSC0003DMT400053380 | Potato | nucleus | 66.87 | 67.58 |
| KRH51289 | Soybean | nucleus | 68.53 | 67.21 |
| GSMUA_Achr9P08310_001 | Banana | vacuole | 44.93 | 60.99 |
| GSMUA_Achr10P... | Banana | nucleus | 61.72 | 60.53 |
| GSMUA_Achr6P07390_001 | Banana | nucleus | 59.15 | 59.69 |
| Zm00001d050781_P001 | Maize | nucleus | 56.88 | 59.68 |
| Os02t0557200-01 | Rice | nucleus | 60.82 | 59.29 |
| Os04t0442000-01 | Rice | nucleus | 59.91 | 58.84 |
| EES06968 | Sorghum | nucleus | 59.76 | 58.78 |
| TraesCS2D01G307600.1 | Wheat | nucleus | 57.79 | 58.41 |
| TraesCS2B01G326400.1 | Wheat | nucleus | 57.64 | 58.26 |
| EES10850 | Sorghum | nucleus | 58.09 | 58.09 |
| TraesCS2A01G309300.1 | Wheat | nucleus | 57.34 | 57.95 |
| GSMUA_Achr6P12780_001 | Banana | nucleus | 60.82 | 57.76 |
| GSMUA_Achr6P29070_001 | Banana | nucleus, vacuole | 60.82 | 57.68 |
| HORVU2Hr1G076920.3 | Barley | nucleus | 57.19 | 56.59 |
| Zm00001d016838_P001 | Maize | nucleus | 59.3 | 55.76 |
| Zm00001d003601_P006 | Maize | nucleus | 57.03 | 55.28 |
| CDX80025 | Canola | nucleus | 45.23 | 51.2 |
| CDX95705 | Canola | nucleus | 41.6 | 50.46 |
| CDY47607 | Canola | nucleus | 45.84 | 50.17 |
| CDY03502 | Canola | nucleus | 43.87 | 48.33 |
| CDY10978 | Canola | nucleus | 45.08 | 47.68 |
| CDY50434 | Canola | nucleus | 44.93 | 47.52 |
| CDY67714 | Canola | nucleus | 32.68 | 40.68 |
| CDX87230 | Canola | nucleus | 50.08 | 39.98 |
| CDY69758 | Canola | nucleus | 25.11 | 39.9 |
| CDY21993 | Canola | nucleus | 32.83 | 39.82 |
| CDY53570 | Canola | nucleus | 30.11 | 39.72 |
| CDX86939 | Canola | nucleus | 50.98 | 39.65 |
| CDY48583 | Canola | nucleus | 32.68 | 39.49 |
| CDY00245 | Canola | nucleus | 50.68 | 39.37 |
| CDY67247 | Canola | nucleus | 50.53 | 39.25 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 21.94 | 39.19 |
| CDY41720 | Canola | nucleus | 32.38 | 38.91 |
| CDY16798 | Canola | nucleus | 50.53 | 38.08 |
| CDX94777 | Canola | nucleus | 30.86 | 36.62 |
| CDY49005 | Canola | nucleus | 30.56 | 36.27 |
| CDY36940 | Canola | nucleus | 29.65 | 35.38 |
| CDY24168 | Canola | nucleus | 30.11 | 35.35 |
| CDY54111 | Canola | nucleus | 30.11 | 35.1 |
| CDY55738 | Canola | nucleus | 28.14 | 34.44 |
| CDY31545 | Canola | nucleus | 36.76 | 32.1 |
| CDX80168 | Canola | nucleus | 36.61 | 31.88 |
| CDY07460 | Canola | nucleus | 35.85 | 30.35 |
| CDY39274 | Canola | nucleus | 35.7 | 30.3 |
| CDY53537 | Canola | nucleus | 36.31 | 29.48 |
| CDX94484 | Canola | nucleus | 27.84 | 29.39 |
| CDX74594 | Canola | nucleus | 36.31 | 29.3 |
| CDY12048 | Canola | nucleus | 35.55 | 27.75 |
| CDY09598 | Canola | nucleus | 36.16 | 27.47 |
| CDY02285 | Canola | nucleus | 36.16 | 27.38 |
| CDX90245 | Canola | nucleus | 35.25 | 27.35 |
| CDY62586 | Canola | nucleus | 34.19 | 26.71 |
| CDX83741 | Canola | nucleus | 34.19 | 26.71 |
| CDY61164 | Canola | nucleus | 33.89 | 26.02 |
| CDY01393 | Canola | nucleus | 34.04 | 26.01 |
| CDY29392 | Canola | nucleus | 33.89 | 25.57 |
| CDY39348 | Canola | nucleus | 33.89 | 25.48 |
| CDX94528 | Canola | nucleus | 25.57 | 25.26 |
| CDX83778 | Canola | nucleus | 36.16 | 23.43 |
| CDX96672 | Canola | nucleus | 36.16 | 23.43 |
| CDY26690 | Canola | nucleus | 36.46 | 22.97 |
| CDY16560 | Canola | nucleus | 36.01 | 22.84 |
| CDX92437 | Canola | nucleus | 35.85 | 22.79 |
| CDY24162 | Canola | nucleus | 22.39 | 22.77 |
| CDY41030 | Canola | nucleus | 36.16 | 22.59 |
| CDY45069 | Canola | nucleus | 35.4 | 21.02 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078H9V1 | UniProt:A0A078H9V1 |
| InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY33603 | ProteinID:CDY33603 | ProteinID:CDY33603.1 |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00054908001 | InterPro:IPR000270 |
| InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF24 | SMART:SM01019 | SUPFAM:SSF101936 |
| SUPFAM:SSF54277 | UniParc:UPI0004EE9654 | SEG:seg | : | : | : |
Description
BnaC01g28340DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078H9V1]
Coordinates
chrLK032318:+:22556..26312
Molecular Weight (calculated)
73458.5 Da
IEP (calculated)
6.433
GRAVY (calculated)
-0.560
Length
661 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASNHPSGK PGGALSDALC RELWHACAGP LITLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRKAEPETDE VYAQITLLPE
101: ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRQNEELRVG VRRHMRQQTN IPSSVISSHS MHIGVLATAA HAITTGTIFS VFYKPRTSRS EFIVSVNRYL EAKNQKLAVG MRFKMRFEGE
301: EAPEKRFSGT IVGVQENKSS VWHDSEWRSL KVQWDEPSSV FRPERVSPWE LEPLVANNTL SAHLPPQRNK RPRPPGLLSP TTAPSTPDGV WKSPADNPSS
401: VPLFSPPAKT AAFGLGGNKS FGVSIGSAFW PTHADGAAES FASALNNESP TEKKQTNGNV CRLFGFELVE NMNVDECFSA ASVSGAVAVD QPVPSNEFDS
501: GQQSESLNIN QANLPSGSGD HEKSSLRSPQ ESQSRQIRSC TKVHMQGSAV GRAVDLTRSE CYEDLFKKLE EMFDIKGELL ESTKKWQVVY TDDEDDMMMV
601: GDDPWNEFCG MVRKIFIYTP EEVKKLSPKN KLTVNVRMQP KTDADENGNT EGRSSSMAGS R
101: ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRQNEELRVG VRRHMRQQTN IPSSVISSHS MHIGVLATAA HAITTGTIFS VFYKPRTSRS EFIVSVNRYL EAKNQKLAVG MRFKMRFEGE
301: EAPEKRFSGT IVGVQENKSS VWHDSEWRSL KVQWDEPSSV FRPERVSPWE LEPLVANNTL SAHLPPQRNK RPRPPGLLSP TTAPSTPDGV WKSPADNPSS
401: VPLFSPPAKT AAFGLGGNKS FGVSIGSAFW PTHADGAAES FASALNNESP TEKKQTNGNV CRLFGFELVE NMNVDECFSA ASVSGAVAVD QPVPSNEFDS
501: GQQSESLNIN QANLPSGSGD HEKSSLRSPQ ESQSRQIRSC TKVHMQGSAV GRAVDLTRSE CYEDLFKKLE EMFDIKGELL ESTKKWQVVY TDDEDDMMMV
601: GDDPWNEFCG MVRKIFIYTP EEVKKLSPKN KLTVNVRMQP KTDADENGNT EGRSSSMAGS R
001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP
401: SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD
501: SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM
601: VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN TEGRSSSMAG SR
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPD GVWKSPADTP
401: SSVPLFSPPA KAATFGHGGN KSFGVSIGSA FWPTNADSAA ESFASAFNNE STEKKQTNGN VCRLFGFELV ENVNVDECFS AASVSGAVAV DQPVPSNEFD
501: SGQQSEPLNI NQSDIPSGSG DPEKSSLRSP QESQSRQIRS CTKVHMQGSA VGRAIDLTRS ECYEDLFKKL EEMFDIKGEL LESTKKWQVV YTDDEDDMMM
601: VGDDPWNEFC GMVRKIFIYT PEEVKKLSPK NKLAVNARMQ LKADAEENGN TEGRSSSMAG SR
Arabidopsis Description
ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.