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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68566
CDX75834
CDX82428
CDX87863
CDX89832
CDX92437
CDX92973
CDY02098
CDY06836
CDY10068
CDY10349
CDY10694
CDY15493
CDY16560
CDY18214
CDY20135
CDY21845
CDY22876
CDY23023
CDY26042
CDY30608
CDY30781
CDY32537
CDY33844
CDY36883
CDY45069
CDY46538
CDY53439
CDY53735
CDY53800
CDY57355
CDY63072
CDY63910
CDY68807
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G20730.1 CDX89832 AT1G04250.1 21734647
AT5G20730.1 CDY10068 AT1G04250.1 21734647
AT5G20730.1 CDY15493 AT1G04250.1 21734647
AT5G20730.1 CDY18214 AT1G04250.1 21734647
AT5G20730.1 CDY32537 AT1G04250.1 21734647
AT5G20730.1 CDY63072 AT1G04250.1 21734647
AT5G20730.1 CDX87863 AT1G51950.1 18505759
AT5G20730.1 CDY22876 AT1G51950.1 18505759
AT5G20730.1 CDY33844 AT1G51950.1 18505759
AT5G20730.1 CDY46538 AT1G51950.1 18505759
AT5G20730.1 CDY53439 AT1G51950.1 18505759
AT5G20730.1 CDY26042 AT1G52830.1 14729917
AT5G20730.1 CDY53800 AT1G52830.1 14729917
AT5G20730.1 CDY68807 AT1G52830.1 14729917
AT5G20730.1 CDX75834 AT3G15540.1 14729917
AT5G20730.1 CDX82428 AT3G15540.1 14729917
AT5G20730.1 CDY20135 AT3G15540.1 14729917
AT5G20730.1 CDY21845 AT3G15540.1 14729917
AT5G20730.1 CDY71748 AT3G15540.1 14729917
AT5G20730.1 CDX75834 AT3G15540.1 21734647
AT5G20730.1 CDX82428 AT3G15540.1 21734647
AT5G20730.1 CDY20135 AT3G15540.1 21734647
AT5G20730.1 CDY21845 AT3G15540.1 21734647
AT5G20730.1 CDY71748 AT3G15540.1 21734647
AT5G20730.1 CDX92973 AT3G23050.1 21734647
AT5G20730.1 CDY10349 AT3G23050.1 21734647
AT5G20730.1 CDY10694 AT3G23050.1 21734647
AT5G20730.1 CDY30781 AT3G23050.1 21734647
AT5G20730.1 CDY63910 AT3G23050.1 21734647
AT5G20730.1 CDX68566 AT3G50060.1 17675404
AT5G20730.1 CDY02098 AT3G50060.1 17675404
AT5G20730.1 CDY23023 AT3G50060.1 17675404
AT5G20730.1 CDY30608 AT3G50060.1 17675404
AT5G20730.1 CDY57355 AT3G50060.1 17675404
AT5G20730.1 CDY36883 AT4G14560.1 14729917
AT5G20730.1 CDY53735 AT4G14560.1 14729917
AT5G20730.1 CDY36883 AT4G14560.1 21734647
AT5G20730.1 CDY53735 AT4G14560.1 21734647
AT5G20730.1 CDY36883 AT4G14560.1 9342315
AT5G20730.1 CDY53735 AT4G14560.1 9342315
AT5G20730.1 CDY06836 AT4G29080.1 21734647
AT5G20730.1 CDX92437 AT5G20730.1 14729917
AT5G20730.1 CDY16560 AT5G20730.1 14729917
AT5G20730.1 CDY45069 AT5G20730.1 14729917
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G20730.1 Thale cress nucleus 90.29 80.6
CDY45069 Canola nucleus 84.62 79.07
CDY16560 Canola nucleus 78.56 78.41
Bra002327.1-P Field mustard nucleus 97.21 70.26
CDX96672 Canola nucleus 58.46 59.61
KRH12587 Soybean nucleus 64.04 59.36
KRH37536 Soybean nucleus 64.13 59.29
CDX83778 Canola nucleus 57.98 59.12
CDY26690 Canola nucleus 58.94 58.44
CDY41030 Canola nucleus 58.85 57.84
KRH19355 Soybean nucleus 62.6 57.56
KRH02575 Soybean nucleus 62.69 57.39
VIT_11s0016g00640.t01 Wine grape nucleus 63.27 56.97
GSMUA_Achr3P10240_001 Banana nucleus 33.94 56.94
GSMUA_Achr9P18170_001 Banana nucleus 46.54 56.67
Solyc07g042260.2.1 Tomato nucleus 60.48 55.32
PGSC0003DMT400006151 Potato nucleus 60.58 54.45
Os06t0196700-02 Rice nucleus 49.04 48.34
TraesCS7D01G161900.1 Wheat nucleus 49.42 48.26
TraesCS7A01G160800.1 Wheat nucleus 49.42 48.22
KXG19536 Sorghum nucleus 48.37 47.77
Zm00001d045026_P002 Maize nucleus 47.98 47.39
TraesCS7B01G065800.2 Wheat plastid 48.94 47.09
HORVU7Hr1G033820.5 Barley nucleus 48.17 47.0
CDY02285 Canola nucleus 36.83 43.87
CDY12048 Canola nucleus 35.58 43.68
CDY09598 Canola nucleus 36.54 43.68
CDX90245 Canola nucleus 35.67 43.54
CDY07460 Canola nucleus 32.6 43.41
CDY39274 Canola nucleus 32.21 43.0
CDY53537 Canola nucleus 33.37 42.63
CDX74594 Canola nucleus 33.17 42.12
CDY62586 Canola nucleus 33.65 41.37
CDX83741 Canola nucleus 33.46 41.13
CDY61164 Canola nucleus 33.37 40.3
CDY01393 Canola nucleus 33.27 40.0
CDY29392 Canola nucleus 33.65 39.95
CDY39348 Canola nucleus 33.08 39.14
CDY27291 Canola nucleus 22.79 38.29
CDX80025 Canola nucleus 21.25 37.84
CDX95705 Canola nucleus 19.71 37.61
CDY47607 Canola nucleus 21.83 37.58
CDY03502 Canola nucleus 21.15 36.67
CDY10978 Canola nucleus 22.02 36.64
CDY50434 Canola nucleus 21.83 36.32
CDY33603 Canola nucleus 22.79 35.85
CDY65065 Canola nucleus 22.69 35.7
CDY67714 Canola nucleus 18.08 35.4
CDY69758 Canola nucleus 13.94 34.86
CDY21993 Canola nucleus 17.6 33.58
CDY48583 Canola nucleus 17.5 33.27
CDY31545 Canola nucleus 22.79 31.31
CDX86939 Canola nucleus 25.58 31.29
CDY41720 Canola nucleus 16.54 31.27
CDY00245 Canola nucleus 25.48 31.14
CDX80168 Canola nucleus 22.5 30.83
CDX94748 Canola endoplasmic reticulum, vacuole 10.96 30.81
CDY53570 Canola nucleus 14.81 30.74
CDX87230 Canola nucleus 24.42 30.68
CDY67247 Canola nucleus 24.71 30.2
CDY36940 Canola nucleus 15.87 29.78
CDY49005 Canola nucleus 15.77 29.44
CDX94777 Canola nucleus 15.67 29.26
CDY16798 Canola nucleus 24.52 29.08
CDY24168 Canola nucleus 15.67 28.95
CDY54111 Canola nucleus 15.29 28.04
CDY55738 Canola nucleus 13.94 26.85
CDX94484 Canola nucleus 14.33 23.8
CDX94528 Canola nucleus 14.23 22.12
CDY24162 Canola nucleus 12.12 19.38
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078DU45InterPro:AUX/IAA_dom
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDX92437ProteinID:CDX92437ProteinID:CDX92437.1InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725
GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00154204001InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300
InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745
PANTHER:PTHR31384PANTHER:PTHR31384:SF21SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0004EE3A2A
SEG:seg:::::
Description
BnaA10g14760D
Coordinates
chrLK031872:+:661684..666654
Molecular Weight (calculated)
114050.0 Da
IEP (calculated)
6.870
GRAVY (calculated)
-0.537
Length
1040 amino acids
Sequence
(BLAST)
0001: MKAPSSNGVS PNPLEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLQ NVTLNADPET EEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKIN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIFRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFVRDGKGQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFAGQPGM PDDGTDMECA LKRAMPWLDN
0401: GLEMKDPSST IFPGLSLVQW MSMQQQNGGQ VPSSAGFFPS MVSPTAAMHN SLGGADDQSK LVSFQTPPGG ISSSNLQFNK PNLQGAMSQL PQPPTTLSQQ
0501: QQLQQLAQQL QSHTHPQPQQ SPPHPQPQSH PQQLQPHKLQ QFQLPQNQLY NGQPAVQQRQ SQQASMHHLQ SQVVSGSIAS SVIAPPSSSL NQSFQQQQQQ
0601: STQLQHTHRH IGASTSQSSV IETSKSSSNL MSIPPQDTQF SRQMEQQQPP GLFQLLQRLQ QQQQQQFLSP GSSSLPSQLL HQQLQSQQFP QLPSPSQVQQ
0701: FPSSCTNTGL PSLQPPQTLV SRPQDKQNPP VGGGAKAYSG ITDGGDAPSS STSPSTNNCQ ISSSTFLNRS QSGPAILIPD PAADMSGSLV QDLYSKSDMR
0801: LKHELVSQQK PKASLTDHQL EANSLFGGGA NVENGFVPDT LLSRGYDSQK DLQNMLSNYG GVTNDIGTEM STSAVRTQSF GIPNVPAISN DLAVNDAGVL
0901: GGGLWPTQTQ RMRTYTKVQK RGSVGRSIDV NRYRGYDELR HDLARMFGIE GQLEDPLTSD WKLVYVDHEN DILLVGDDPW EEFVNCVQSI KILSSAEVQQ
1001: MSLDGNFAGL PATNQACSGG DNGNGWRGQY DDNSATSFNR
Best Arabidopsis Sequence Match ( AT5G20730.2 )
(BLAST)
0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
Arabidopsis Description
NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.