Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018993.1-P | Field mustard | nucleus | 100.0 | 96.55 |
| CDY26042 | Canola | nucleus | 95.92 | 95.92 |
| CDY53800 | Canola | nucleus | 85.2 | 88.83 |
| AT1G52830.1 | Thale cress | nucleus | 75.51 | 78.31 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 59.69 | 60.31 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 59.69 | 60.31 |
| KRH47514 | Soybean | nucleus | 56.63 | 59.36 |
| KRH09813 | Soybean | nucleus | 56.63 | 59.36 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 58.16 | 57.87 |
| KRH44390 | Soybean | nucleus | 57.14 | 57.44 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 57.65 | 57.36 |
| KRH23504 | Soybean | nucleus | 55.1 | 57.14 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 47.96 | 54.34 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 52.55 | 53.65 |
| Solyc03g120380.2.1 | Tomato | nucleus | 52.55 | 53.65 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 52.55 | 52.82 |
| PGSC0003DMT400042572 | Potato | nucleus | 29.08 | 52.78 |
| CDY53305 | Canola | cytosol | 41.84 | 52.23 |
| CDY40837 | Canola | nucleus | 43.88 | 50.29 |
| CDY35493 | Canola | nucleus | 43.88 | 50.29 |
| CDX92972 | Canola | nucleus | 43.37 | 49.71 |
| CDY10692 | Canola | nucleus | 43.37 | 49.42 |
| CDY10346 | Canola | nucleus | 42.86 | 48.84 |
| CDX94876 | Canola | nucleus | 42.35 | 48.54 |
| CDY53735 | Canola | nucleus | 39.29 | 44.77 |
| CDY36883 | Canola | nucleus | 38.78 | 44.19 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.35 | 43.46 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 39.8 | 43.33 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.84 | 42.93 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 39.29 | 41.4 |
| CDY10069 | Canola | nucleus | 38.78 | 41.3 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 38.78 | 40.86 |
| CDY10694 | Canola | mitochondrion | 34.69 | 39.08 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 42.86 | 36.84 |
| CDY32537 | Canola | nucleus | 42.35 | 36.4 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 43.37 | 36.02 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 42.35 | 35.93 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 41.84 | 35.81 |
| CDY18214 | Canola | nucleus | 40.82 | 35.71 |
| CDX89832 | Canola | nucleus | 40.82 | 35.71 |
| CDY47148 | Canola | nucleus | 41.84 | 35.19 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 41.84 | 35.19 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 42.35 | 35.02 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 42.35 | 35.02 |
| CDY40881 | Canola | cytosol | 32.14 | 34.43 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 41.84 | 34.17 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 41.84 | 34.17 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 41.84 | 33.33 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 30.1 | 32.6 |
| CDY06836 | Canola | nucleus | 41.84 | 32.54 |
| CDY25617 | Canola | nucleus | 41.33 | 30.45 |
| CDX89499 | Canola | nucleus | 41.33 | 29.89 |
| CDY50750 | Canola | nucleus, plastid | 42.86 | 28.87 |
| CDY37837 | Canola | mitochondrion | 41.84 | 27.7 |
| CDY68170 | Canola | nucleus, plastid | 43.37 | 27.33 |
| CDY18679 | Canola | plastid | 43.37 | 27.24 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 35.2 | 25.0 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 41.33 | 24.4 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 40.82 | 24.32 |
| CDY63072 | Canola | nucleus | 42.86 | 21.11 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078JTR4 | UniProt:A0A078JTR4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY68807 | ProteinID:CDY68807 | ProteinID:CDY68807.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00079891001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF87 | SUPFAM:SSF54277 | UniParc:UPI0004EF3358 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g37420DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTR4]
Coordinates
chrLK038038:+:3799..4883
Molecular Weight (calculated)
21827.3 Da
IEP (calculated)
7.136
GRAVY (calculated)
-0.339
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEGLGLEI TELRLGLPVD NNGERLVSGS KKTKRVFSEM MISSSLDTDG ANSVVSSVED DSVPKDKSQA VGWPPVCSYR TKKNNNKESS KAIGYVKVSM
101: CGVPYLRKVD LGTSKGYTHL ATVLEKLFDC LGLGVALKEG EKFEYVIIYE DKDRDWMLVG DVPWEMFKES CMRLRIVKRS DATGFGLQRD LSLQLE
101: CGVPYLRKVD LGTSKGYTHL ATVLEKLFDC LGLGVALKEG EKFEYVIIYE DKDRDWMLVG DVPWEMFKES CMRLRIVKRS DATGFGLQRD LSLQLE
001: MAKEGLALEI TELRLGLPGD NYSEISVCGS SKKKKRVLSD MMTSSALDTE NENSVVSSVE DESLPVVKSQ AVGWPPVCSY RRKKNNEEAS KAIGYVKVSM
101: DGVPYMRKID LGSSNSYINL VTVLENLFGC LGIGVAKEGK KCEYIIIYED KDRDWMLVGD VPWQMFKESC KRLRIVKRSD ATGFGLQQD
101: DGVPYMRKID LGSSNSYINL VTVLENLFGC LGIGVAKEGK KCEYIIIYED KDRDWMLVGD VPWQMFKESC KRLRIVKRSD ATGFGLQQD
Arabidopsis Description
IAA6Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W781]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.