Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50113 | Canola | cytosol, nucleus, plastid | 63.39 | 64.09 |
| CDY37837 | Canola | mitochondrion | 80.33 | 49.66 |
| CDY10694 | Canola | mitochondrion | 46.99 | 49.43 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 73.22 | 48.55 |
| CDY68170 | Canola | nucleus, plastid | 78.14 | 45.98 |
| CDY18679 | Canola | plastid | 75.41 | 44.23 |
| CDY40837 | Canola | nucleus | 38.8 | 41.52 |
| CDX92972 | Canola | nucleus | 38.8 | 41.52 |
| CDX94876 | Canola | nucleus | 38.8 | 41.52 |
| CDY35493 | Canola | nucleus | 38.8 | 41.52 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 74.32 | 41.34 |
| CDY53735 | Canola | nucleus | 38.8 | 41.28 |
| CDY36883 | Canola | nucleus | 38.8 | 41.28 |
| CDY10692 | Canola | nucleus | 38.8 | 41.28 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 40.44 | 41.11 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 74.32 | 40.96 |
| CDY10346 | Canola | nucleus | 38.25 | 40.7 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 51.37 | 39.83 |
| CDY18214 | Canola | nucleus | 48.63 | 39.73 |
| CDX89832 | Canola | nucleus | 48.63 | 39.73 |
| CDY10069 | Canola | nucleus | 39.89 | 39.67 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 49.73 | 39.39 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 49.18 | 39.3 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 39.89 | 39.25 |
| CDY47148 | Canola | nucleus | 49.73 | 39.06 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 49.73 | 39.06 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 48.63 | 39.04 |
| CDY06836 | Canola | nucleus | 53.55 | 38.89 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 50.27 | 38.82 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.34 | 38.71 |
| CDY32537 | Canola | nucleus | 48.09 | 38.6 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 49.73 | 38.4 |
| CDY25617 | Canola | nucleus | 55.74 | 38.35 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 50.27 | 38.33 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 50.27 | 38.33 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 39.89 | 38.22 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 50.82 | 37.8 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 39.34 | 37.7 |
| CDX89499 | Canola | nucleus | 55.74 | 37.64 |
| CDY53305 | Canola | cytosol | 31.69 | 36.94 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 38.8 | 36.6 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 38.25 | 36.08 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 37.7 | 35.03 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 37.7 | 35.03 |
| CDY68807 | Canola | nucleus | 34.43 | 32.14 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 30.05 | 31.79 |
| CDY26042 | Canola | nucleus | 33.88 | 31.63 |
| CDY50750 | Canola | nucleus, plastid | 49.73 | 31.27 |
| CDY53800 | Canola | nucleus | 30.6 | 29.79 |
| CDY63072 | Canola | nucleus | 48.63 | 22.36 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HT22 | UniProt:A0A078HT22 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY40881 | ProteinID:CDY40881 | ProteinID:CDY40881.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00071913001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF24 | SUPFAM:SSF54277 | UniParc:UPI0004EEEC8F |
Description
BnaCnng09720DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT22]
Coordinates
chrLK032483:-:210977..212393
Molecular Weight (calculated)
20975.8 Da
IEP (calculated)
9.726
GRAVY (calculated)
-0.175
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLWQVLHPQ QDDLKATELT LGLPLKGKFW IFMFFFRAQI VGWPQVRSFR KNTMATTCSA ALFIKVSMDG APYLKKVDLR SYTNYMEFSS ALEKMFTTFT
101: LGQCGSNRAT WKDKLCETKL KDILYGKDYV LTYEDKDGDW MRAGDVPLEM FIDVCKKLKI MKGCNAIGLA AAPRAMEKSK MRA
101: LGQCGSNRAT WKDKLCETKL KDILYGKDYV LTYEDKDGDW MRAGDVPLEM FIDVCKKLKI MKGCNAIGLA AAPRAMEKSK MRA
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.