CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67874
CDX68829
CDX72351
CDX75231
CDX75834
CDX82428
CDX87307
CDX89832
CDX89844
CDX92973
CDY10068
CDY10349
CDY10694
CDY11402
CDY13478
CDY15493
CDY18205
CDY18214
CDY20135
CDY21845
CDY25089
CDY26042
CDY30781
CDY32537
CDY32934
CDY36883
CDY39982
CDY53735
CDY53800
CDY58757
CDY63072
CDY63910
CDY68807
CDY69497
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	CDX89844	AT1G04100.1	21734647
AT5G37020.1	CDY18205	AT1G04100.1	21734647
AT5G37020.1	CDX89832	AT1G04250.1	21734647
AT5G37020.1	CDY10068	AT1G04250.1	21734647
AT5G37020.1	CDY15493	AT1G04250.1	21734647
AT5G37020.1	CDY18214	AT1G04250.1	21734647
AT5G37020.1	CDY32537	AT1G04250.1	21734647
AT5G37020.1	CDY63072	AT1G04250.1	21734647
AT5G37020.1	CDY26042	AT1G52830.1	14729917
AT5G37020.1	CDY53800	AT1G52830.1	14729917
AT5G37020.1	CDY68807	AT1G52830.1	14729917
AT5G37020.1	CDX87307	AT1G80390.1	21734647
AT5G37020.1	CDY39982	AT1G80390.1	21734647
AT5G37020.1	CDX75834	AT3G15540.1	14729917
AT5G37020.1	CDX82428	AT3G15540.1	14729917
AT5G37020.1	CDY20135	AT3G15540.1	14729917
AT5G37020.1	CDY21845	AT3G15540.1	14729917
AT5G37020.1	CDY71748	AT3G15540.1	14729917
AT5G37020.1	CDX75834	AT3G15540.1	21734647
AT5G37020.1	CDX82428	AT3G15540.1	21734647
AT5G37020.1	CDY20135	AT3G15540.1	21734647
AT5G37020.1	CDY21845	AT3G15540.1	21734647
AT5G37020.1	CDY71748	AT3G15540.1	21734647
AT5G37020.1	CDX92973	AT3G23050.1	21734647
AT5G37020.1	CDY10349	AT3G23050.1	21734647
AT5G37020.1	CDY10694	AT3G23050.1	21734647
AT5G37020.1	CDY30781	AT3G23050.1	21734647
AT5G37020.1	CDY63910	AT3G23050.1	21734647
AT5G37020.1	CDX67874	AT3G62100.1	21734647
AT5G37020.1	CDY11402	AT3G62100.1	21734647
AT5G37020.1	CDY25089	AT3G62100.1	21734647
AT5G37020.1	CDY58757	AT3G62100.1	21734647
AT5G37020.1	CDY36883	AT4G14560.1	14729917
AT5G37020.1	CDY53735	AT4G14560.1	14729917
AT5G37020.1	CDY36883	AT4G14560.1	21734647
AT5G37020.1	CDY53735	AT4G14560.1	21734647
AT5G37020.1	CDX68829	AT4G32280.1	21734647
AT5G37020.1	CDX72351	AT4G32280.1	21734647
AT5G37020.1	CDX75231	AT4G32280.1	21734647
AT5G37020.1	CDY13478	AT4G32280.1	21734647
AT5G37020.1	CDY32934	AT5G43700.1	21734647
AT5G37020.1	CDY69497	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53537	Canola	nucleus	96.7	97.3
Bra028110.1-P	Field mustard	nucleus	99.15	96.21
AT5G37020.1	Thale cress	nucleus	91.82	92.72
CDY39274	Canola	nucleus	75.46	79.33
CDY07460	Canola	nucleus	75.34	79.0
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.08	76.92
KRH30740	Soybean	nucleus	69.23	67.18
KRH17251	Soybean	nucleus	68.99	67.02
KRH72896	Soybean	nucleus	69.23	66.94
KRG98044	Soybean	nucleus	68.5	66.71
Solyc03g031970.2.1	Tomato	nucleus	66.54	64.57
Solyc02g037530.2.1	Tomato	nucleus	66.3	64.49
GSMUA_Achr11P...	Banana	nucleus	60.93	61.6
PGSC0003DMT400048034	Potato	nucleus	56.53	61.57
GSMUA_Achr4P25960_001	Banana	nucleus	59.58	60.92
KXG27404	Sorghum	nucleus	58.36	58.36
Zm00001d001879_P036	Maize	nucleus	58.0	58.14
Os04t0671900-01	Rice	nucleus	58.0	58.07
GSMUA_AchrUn_...	Banana	mitochondrion	36.14	57.93
VIT_04s0079g00200.t01	Wine grape	nucleus	49.82	57.71
TraesCS2A01G547800.1	Wheat	nucleus	57.14	56.32
TraesCS2D01G548900.1	Wheat	nucleus	57.14	56.18
HORVU2Hr1G121110.32	Barley	nucleus	57.39	56.09
TraesCS2B01G578500.1	Wheat	nucleus	57.02	56.06
CDY02285	Canola	nucleus	58.85	55.21
CDY12048	Canola	nucleus	56.78	54.9
CDX90245	Canola	nucleus	57.02	54.81
CDY09598	Canola	nucleus	57.39	54.02
Zm00001d026590_P003	Maize	nucleus	55.31	53.42
GSMUA_Achr8P13620_001	Banana	nucleus	24.18	40.91
CDX80025	Canola	nucleus	28.08	39.38
CDY27291	Canola	nucleus	29.18	38.61
CDX95705	Canola	nucleus	25.4	38.17
CDY47607	Canola	nucleus	27.47	37.25
CDY62586	Canola	nucleus	38.22	37.0
CDX83741	Canola	nucleus	38.1	36.88
CDY69758	Canola	nucleus	18.56	36.54
CDY65065	Canola	nucleus	29.43	36.46
CDY10978	Canola	nucleus	27.72	36.32
CDY33603	Canola	nucleus	29.3	36.31
CDY50434	Canola	nucleus	27.47	36.0
CDY03502	Canola	nucleus	26.37	36.0
CDY61164	Canola	nucleus	37.48	35.66
CDY67714	Canola	nucleus	22.95	35.4
CDY29392	Canola	nucleus	37.85	35.39
CDY39348	Canola	nucleus	37.73	35.15
CDY01393	Canola	nucleus	37.12	35.14
CDX96672	Canola	nucleus	43.71	35.1
CDX83778	Canola	nucleus	43.47	34.9
CDY21993	Canola	nucleus	22.95	34.5
CDY26690	Canola	nucleus	43.71	34.13
CDY48583	Canola	nucleus	22.71	34.0
CDY41030	Canola	nucleus	43.47	33.65
CDX92437	Canola	nucleus	42.12	33.17
CDY16560	Canola	nucleus	41.27	32.44
CDY31545	Canola	nucleus	29.91	32.36
CDX94748	Canola	endoplasmic reticulum, vacuole	14.53	32.16
CDY49005	Canola	nucleus	21.73	31.96
CDX94777	Canola	nucleus	21.73	31.96
CDX80168	Canola	nucleus	29.55	31.88
CDY36940	Canola	nucleus	21.37	31.59
CDY53570	Canola	nucleus	19.29	31.54
CDY45069	Canola	nucleus	42.61	31.36
CDY41720	Canola	nucleus	21.0	31.27
CDX87230	Canola	nucleus	31.5	31.16
CDY24168	Canola	nucleus	21.25	30.91
CDX86939	Canola	nucleus	31.99	30.82
CDY54111	Canola	nucleus	21.25	30.69
CDY00245	Canola	nucleus	31.87	30.67
CDY67247	Canola	nucleus	31.26	30.08
CDY16798	Canola	nucleus	31.62	29.53
CDY55738	Canola	nucleus	18.8	28.52
CDX94484	Canola	nucleus	19.41	25.4
CDX94528	Canola	nucleus	18.32	22.42
CDY24162	Canola	nucleus	15.87	20.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078CEN7	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlants:CDX74594	ProteinID:CDX74594	ProteinID:CDX74594.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00114551001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0004EF1BD7	SEG:seg

Description

BnaA04g07950D

Coordinates

chrLK031801:+:1866854..1870859

Molecular Weight (calculated)

90462.7 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.443

Length

819 amino acids

Sequence
(BLAST)

001: MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLHDGRGEL GSGLPWLRGG
401: GGGEQQGLLP LNYPSVGLFP WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPPPHH QYLQQSASHN SDLMLQQQQQ QHLMHAQTQI
501: MSENLPQRQE VSKQQPGGGG QQSVDQNAYL NALKMQNGQL QQWQQHSDMP SPSSFMKADF TDKFPTTASP MQQNSTSPGS AGHGSNLLNF SITGQSVLPE
601: QLMGEGWSPK ASNTFSEPLS LPPQAYAGKS LALETASANV NPSVFGVDPG SGLFLPSTVP RFASSSSGGD AEAYPMSLAD SGFENSLYNS CMQDTTHELL
701: HGVGQISPSN QTKNFVKVYK SGSVGRSLDI SRFSSYHELR EELGKMFAIE GLLEDPLRSG WQLVFVDKEN DILLLGDDPW ESFVSNVWYI KILSPEDVQE
801: MGDHGEGSGG SLPQNPTHL

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.