Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G547800.1 | Wheat | nucleus | 99.28 | 99.52 |
TraesCS2D01G548900.1 | Wheat | nucleus | 99.4 | 99.4 |
HORVU2Hr1G121110.32 | Barley | nucleus | 98.08 | 97.49 |
Os04t0671900-01 | Rice | nucleus | 90.28 | 91.93 |
KXG27404 | Sorghum | nucleus | 89.92 | 91.45 |
Zm00001d001879_P036 | Maize | nucleus | 88.72 | 90.45 |
Zm00001d026590_P003 | Maize | nucleus | 84.03 | 82.55 |
GSMUA_Achr8P13630_001 | Banana | cytosol, nucleus, plastid | 28.21 | 78.6 |
GSMUA_Achr4P25960_001 | Banana | nucleus | 61.22 | 63.67 |
GSMUA_Achr11P... | Banana | nucleus | 61.58 | 63.33 |
KRH30740 | Soybean | nucleus | 62.79 | 61.97 |
KRH17251 | Soybean | nucleus | 62.55 | 61.8 |
KRG98044 | Soybean | nucleus | 62.3 | 61.71 |
KRH72896 | Soybean | nucleus | 62.55 | 61.51 |
Solyc02g037530.2.1 | Tomato | nucleus | 60.86 | 60.21 |
Solyc03g031970.2.1 | Tomato | nucleus | 60.62 | 59.83 |
GSMUA_AchrUn_... | Banana | mitochondrion | 36.25 | 59.1 |
AT5G37020.1 | Thale cress | nucleus | 57.14 | 58.69 |
CDY39274 | Canola | nucleus | 54.74 | 58.54 |
CDY07460 | Canola | nucleus | 54.86 | 58.51 |
Bra004125.1-P | Field mustard | nucleus | 54.62 | 58.33 |
PGSC0003DMT400048034 | Potato | nucleus | 52.22 | 57.85 |
CDY53537 | Canola | nucleus | 55.94 | 57.25 |
CDX74594 | Canola | nucleus | 56.06 | 57.02 |
Bra028110.1-P | Field mustard | nucleus | 56.3 | 55.57 |
VIT_04s0079g00200.t01 | Wine grape | nucleus | 45.62 | 53.75 |
TraesCS7B01G363100.1 | Wheat | nucleus | 58.58 | 53.69 |
TraesCS6B01G167100.1 | Wheat | nucleus | 57.38 | 51.56 |
TraesCS5B01G039800.1 | Wheat | nucleus | 55.1 | 51.52 |
GSMUA_Achr8P13620_001 | Banana | nucleus | 23.65 | 40.7 |
TraesCS2B01G326400.1 | Wheat | nucleus | 29.17 | 37.16 |
TraesCS7B01G065800.2 | Wheat | plastid | 48.02 | 37.0 |
TraesCS2B01G519200.2 | Wheat | nucleus | 38.42 | 33.51 |
TraesCS6B01G141300.2 | Wheat | nucleus | 43.94 | 32.36 |
TraesCS7B01G138900.6 | Wheat | nucleus | 41.78 | 31.81 |
TraesCS3B01G475800.1 | Wheat | nucleus | 29.17 | 30.53 |
TraesCS7B01G316600.1 | Wheat | nucleus | 42.14 | 29.9 |
TraesCS3B01G486000.2 | Wheat | nucleus | 28.57 | 28.81 |
TraesCS3B01G190100.1 | Wheat | nucleus | 25.69 | 28.23 |
Protein Annotations
MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
InterPro:B3_DNA-bd | ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009733 | GO:GO:0009791 | GO:GO:0009908 |
GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
PANTHER:PTHR31384:SF2 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | EnsemblPlantsGene:TraesCS2B01G578500 | EnsemblPlants:TraesCS2B01G578500.1 |
TIGR:cd10017 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:766557477..766568923
Molecular Weight (calculated)
92708.7 Da
IEP (calculated)
6.287
GRAVY (calculated)
-0.528
Length
833 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSGASLG GQPPPPPPAA PPEEEKKNLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE QVAASTNKEV EGHIPNYPNL PPQLICQLHD VTMHADVETD
101: EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFTQQ PPAQELIARD IHDVEWKFRH IFRGQPKRHL
201: LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR
301: ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL
401: MWLRGVAGDG GYQSMNFQSP GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQTVSAD
501: SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG
601: NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST
701: IPSGSTYLQS PMYGCLDDSS GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS GWQLVFVDRE NDVLLLGDDP
801: WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS
101: EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFTQQ PPAQELIARD IHDVEWKFRH IFRGQPKRHL
201: LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR
301: ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL
401: MWLRGVAGDG GYQSMNFQSP GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQTVSAD
501: SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG
601: NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST
701: IPSGSTYLQS PMYGCLDDSS GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS GWQLVFVDRE NDVLLLGDDP
801: WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.