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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • plastid 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G37020.1 TraesCS5A01G058600.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS5A01G378300.2 AT1G04250.1 21734647
AT5G37020.1 TraesCS5A01G382600.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS5B01G058500.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS5B01G381900.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS5B01G386800.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS5D01G069300.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS5D01G388300.2 AT1G04250.1 21734647
AT5G37020.1 TraesCS5D01G392000.1 AT1G04250.1 21734647
AT5G37020.1 TraesCS2A01G592700.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS2A01G592900.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS2B01G591500.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS2D01G561800.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS5A01G317200.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS5B01G317800.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS5D01G323500.1 AT1G80390.1 21734647
AT5G37020.1 TraesCS5A01G058600.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS5A01G378300.2 AT3G23050.1 21734647
AT5G37020.1 TraesCS5A01G382600.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS5B01G058500.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS5B01G381900.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS5B01G386800.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS5D01G069300.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS5D01G388300.2 AT3G23050.1 21734647
AT5G37020.1 TraesCS5D01G392000.1 AT3G23050.1 21734647
AT5G37020.1 TraesCS1A01G082700.2 AT3G62100.1 21734647
AT5G37020.1 TraesCS1B01G100300.1 AT3G62100.1 21734647
AT5G37020.1 TraesCS1D01G084100.1 AT3G62100.1 21734647
AT5G37020.1 TraesCS5A01G058700.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5A01G378200.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5B01G058800.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5B01G381800.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5B01G446100.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5D01G069200.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5D01G388200.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5D01G449400.1 AT4G14560.1 14729917
AT5G37020.1 TraesCS5A01G058700.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5A01G378200.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5B01G058800.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5B01G381800.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5B01G446100.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5D01G069200.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5D01G388200.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS5D01G449400.1 AT4G14560.1 21734647
AT5G37020.1 TraesCS6A01G373300.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS6B01G411000.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS6D01G357500.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7A01G129000.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7B01G029000.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7B01G029100.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7D01G127800.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7D01G127900.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7D01G128100.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS7D01G128200.1 AT4G32280.1 21734647
AT5G37020.1 TraesCS5A01G058700.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5A01G378200.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5B01G058800.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5B01G381800.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5B01G446100.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5D01G069200.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5D01G388200.1 AT5G43700.1 21734647
AT5G37020.1 TraesCS5D01G449400.1 AT5G43700.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G547800.1 Wheat nucleus 99.28 99.52
TraesCS2D01G548900.1 Wheat nucleus 99.4 99.4
HORVU2Hr1G121110.32 Barley nucleus 98.08 97.49
Os04t0671900-01 Rice nucleus 90.28 91.93
KXG27404 Sorghum nucleus 89.92 91.45
Zm00001d001879_P036 Maize nucleus 88.72 90.45
Zm00001d026590_P003 Maize nucleus 84.03 82.55
GSMUA_Achr8P13630_001 Banana cytosol, nucleus, plastid 28.21 78.6
GSMUA_Achr4P25960_001 Banana nucleus 61.22 63.67
GSMUA_Achr11P... Banana nucleus 61.58 63.33
KRH30740 Soybean nucleus 62.79 61.97
KRH17251 Soybean nucleus 62.55 61.8
KRG98044 Soybean nucleus 62.3 61.71
KRH72896 Soybean nucleus 62.55 61.51
Solyc02g037530.2.1 Tomato nucleus 60.86 60.21
Solyc03g031970.2.1 Tomato nucleus 60.62 59.83
GSMUA_AchrUn_... Banana mitochondrion 36.25 59.1
AT5G37020.1 Thale cress nucleus 57.14 58.69
CDY39274 Canola nucleus 54.74 58.54
CDY07460 Canola nucleus 54.86 58.51
Bra004125.1-P Field mustard nucleus 54.62 58.33
PGSC0003DMT400048034 Potato nucleus 52.22 57.85
CDY53537 Canola nucleus 55.94 57.25
CDX74594 Canola nucleus 56.06 57.02
Bra028110.1-P Field mustard nucleus 56.3 55.57
VIT_04s0079g00200.t01 Wine grape nucleus 45.62 53.75
TraesCS7B01G363100.1 Wheat nucleus 58.58 53.69
TraesCS6B01G167100.1 Wheat nucleus 57.38 51.56
TraesCS5B01G039800.1 Wheat nucleus 55.1 51.52
GSMUA_Achr8P13620_001 Banana nucleus 23.65 40.7
TraesCS2B01G326400.1 Wheat nucleus 29.17 37.16
TraesCS7B01G065800.2 Wheat plastid 48.02 37.0
TraesCS2B01G519200.2 Wheat nucleus 38.42 33.51
TraesCS6B01G141300.2 Wheat nucleus 43.94 32.36
TraesCS7B01G138900.6 Wheat nucleus 41.78 31.81
TraesCS3B01G475800.1 Wheat nucleus 29.17 30.53
TraesCS7B01G316600.1 Wheat nucleus 42.14 29.9
TraesCS3B01G486000.2 Wheat nucleus 28.57 28.81
TraesCS3B01G190100.1 Wheat nucleus 25.69 28.23
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90InterPro:AUX/IAA_domInterPro:Auxin_resp
InterPro:B3_DNA-bdncoils:CoilInterPro:DNA-bd_pseudobarrel_sfGO:GO:0000003GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0007275GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009733GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0043565InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300InterPro:PB1_dom
PFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384
PANTHER:PTHR31384:SF2SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277EnsemblPlantsGene:TraesCS2B01G578500EnsemblPlants:TraesCS2B01G578500.1
TIGR:cd10017SEG:seg::::
Description
No Description!
Coordinates
chr2B:+:766557477..766568923
Molecular Weight (calculated)
92708.7 Da
IEP (calculated)
6.287
GRAVY (calculated)
-0.528
Length
833 amino acids
Sequence
(BLAST)
001: MSSSSGASLG GQPPPPPPAA PPEEEKKNLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE QVAASTNKEV EGHIPNYPNL PPQLICQLHD VTMHADVETD
101: EVYAQMTLQP LNPQEQNDAY LPAEMGIMSK QPTNYFCKTL TASDTSTHGG FSVPRRAAER VFPPLDFTQQ PPAQELIARD IHDVEWKFRH IFRGQPKRHL
201: LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL WLGIRRANRT QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA CPSEFVIPLS KYIKAVFHTR
301: ISVGMRFRML FETEESSVRR YMGTITEVSD ADPVRWASSY WRSVKVGWDE STAGERPPRV SLWEIEPLTT FPMYPSLFPL RVKHPWYSGV AGLQDDSNAL
401: MWLRGVAGDG GYQSMNFQSP GIGSWGQQRL HPSLMSTEHD QYQAVVAAAA AASQSGGYMK QQFLNLQQPM QSPQEHCNLN PLLQQQILQQ ASQQQTVSAD
501: SQNIQTMLNS SAIQHQLQQL QQLQQVHQVQ QAQQAHIDQK QKIQSDQTYH VPTSASLPSP TSLPSHLREK FGFSDPNANS SSFTTSSSSD NMLESNFLQG
601: NSKAVDLSRF NQPVASDQQQ QQQQQQQQAW KQKFMGSQSL SFGGSGLLNS PTSKDGSLES KIGSDVQNQS LFSPQVDSSS LLYNMVPNMT SNVADNNMST
701: IPSGSTYLQS PMYGCLDDSS GIFQNTGEND PTSRTFVKVY KSGSVGRSLD ITRFSNYAEL REELGQMYGI RGQLDDPDRS GWQLVFVDRE NDVLLLGDDP
801: WESFVNSVWY IKILSPEDVH KLGKQGNDPR YLS
Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.