Factsheet for Bra004125.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07460	Canola	nucleus	99.23	99.1
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	29.1	75.92
Bra028110.1-P	Field mustard	nucleus	78.97	72.99
KRH17251	Soybean	nucleus	68.21	63.11
KRH72896	Soybean	nucleus	68.08	62.69
KRH30740	Soybean	nucleus	67.56	62.44
KRG98044	Soybean	nucleus	66.79	61.95
Solyc02g037530.2.1	Tomato	nucleus	65.26	60.45
Solyc03g031970.2.1	Tomato	nucleus	65.13	60.19
GSMUA_Achr4P25960_001	Banana	nucleus	60.64	59.05
GSMUA_Achr11P...	Banana	nucleus	60.9	58.64
Os04t0671900-01	Rice	nucleus	59.87	57.09
KXG27404	Sorghum	nucleus	59.87	57.02
GSMUA_AchrUn_...	Banana	mitochondrion	37.31	56.95
Zm00001d001879_P036	Maize	nucleus	59.62	56.92
PGSC0003DMT400048034	Potato	nucleus	54.74	56.78
TraesCS2A01G547800.1	Wheat	nucleus	58.46	54.87
TraesCS2D01G548900.1	Wheat	nucleus	58.59	54.86
TraesCS2B01G578500.1	Wheat	nucleus	58.33	54.62
HORVU2Hr1G121110.32	Barley	nucleus	58.59	54.53
Bra010776.1-P	Field mustard	nucleus	57.18	53.61
VIT_04s0079g00200.t01	Wine grape	nucleus	48.46	53.47
Bra025775.1-P	Field mustard	nucleus	31.79	52.77
Zm00001d026590_P003	Maize	nucleus	56.15	51.65
Bra014419.1-P	Field mustard	nucleus	29.23	41.08
GSMUA_Achr8P13620_001	Banana	nucleus	24.49	39.46
Bra004530.1-P	Field mustard	nucleus	28.97	38.7
Bra013748.1-P	Field mustard	nucleus	28.72	37.21
Bra019255.1-P	Field mustard	nucleus	29.23	36.6
Bra035427.1-P	Field mustard	nucleus	30.51	35.79
Bra016492.1-P	Field mustard	nucleus	38.21	35.65
Bra034234.1-P	Field mustard	nucleus	23.59	34.01
Bra012190.1-P	Field mustard	nucleus	37.69	33.91
Bra016517.1-P	Field mustard	nucleus	42.95	33.17
Bra025720.1-P	Field mustard	nucleus	43.85	32.6
Bra018124.1-P	Field mustard	nucleus	22.82	32.07
Bra027944.1-P	Field mustard	nucleus	22.56	32.06
Bra020125.1-P	Field mustard	nucleus	45.0	31.91
Bra002479.1-P	Field mustard	nucleus	30.9	31.79
Bra010048.1-P	Field mustard	nucleus	33.33	30.55
Bra017362.1-P	Field mustard	nucleus	20.51	29.63
Bra035910.1-P	Field mustard	nucleus	33.08	29.05
Bra002327.1-P	Field mustard	nucleus	43.85	23.77
Bra007632.1-P	Field mustard	nucleus	29.23	21.61

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01305	ProteinID:AFD01305.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra004125	EnsemblPlants:Bra004125.1	EnsemblPlants:Bra004125.1-P	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4D2	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EMBL:JN979471	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI0002535793	SEG:seg	:	:	:	:

Description

AT5G37020 (E=0.0) ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor

Coordinates

chrA07:+:16973440..16977272

Molecular Weight (calculated)

87329.5 Da

IEP (calculated)

6.390

GRAVY (calculated)

-0.503

Length

780 amino acids

Sequence
(BLAST)

001: MNLSSSGFGH QSHEGEKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ
101: PLTQEEQKDT FVPIELGVPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM
301: LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGE
401: NGLLPLNYPS PNVFPWMQQR LDLSLLGTDQ NQQYQAMLAA GLQNFGGGGG DPLRQQFVHL QEPNHQYLQQ QSAPIIHSSD LQQHHQQQQM PRHLLQAQPQ
501: ILTENLPQQN MRQEVSNQAQ QPDRVWQHSD LLSPSDFTNK FTSAATNPQV QQQNLTLQGS GDSSSHLLNF SITGQSEQLP THDWSLKHSH HPETNYFSEP
601: LSLGQGYGRA SPSLEPPPST QNLSLFGVDS DSGLFLPTTV PRFGDTSSMP LADSGFQNTL QETTEVAAHG GVEHTNNFVK VYKSGSVGRS LDISRFSSYN
701: ELREELGRMF DIKGLLEDAF RSGWQLVFVD KEDDILLLGD DPWESFVNSV WYIKILSPDD VHKMGEHGEG SSFPQNLTHF

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.