Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G386800.1 | Wheat | nucleus | 99.57 | 98.72 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 99.14 | 98.71 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 97.84 | 95.78 |
| EER90896 | Sorghum | nucleus | 84.91 | 83.83 |
| Os03t0742900-01 | Rice | vacuole | 84.05 | 82.63 |
| Zm00001d033976_P002 | Maize | nucleus | 82.76 | 81.01 |
| Zm00001d013302_P002 | Maize | nucleus | 77.16 | 78.51 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 47.41 | 64.71 |
| CDY10694 | Canola | mitochondrion | 44.4 | 59.2 |
| PGSC0003DMT400041976 | Potato | nucleus | 53.02 | 57.75 |
| KRG92683 | Soybean | nucleus | 56.03 | 57.27 |
| Solyc06g053830.2.1 | Tomato | nucleus | 52.59 | 55.96 |
| KRH34377 | Soybean | nucleus | 56.47 | 54.81 |
| Solyc06g008590.2.1 | Tomato | nucleus | 49.14 | 54.81 |
| PGSC0003DMT400013627 | Potato | nucleus | 50.0 | 54.21 |
| Bra040398.1-P | Field mustard | nucleus | 53.88 | 54.11 |
| CDY47148 | Canola | nucleus | 54.31 | 54.08 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 53.45 | 53.68 |
| Bra039855.1-P | Field mustard | nucleus | 53.88 | 53.65 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 54.31 | 53.39 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 53.45 | 53.22 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 57.76 | 53.17 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 54.31 | 53.16 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 54.31 | 53.16 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 55.6 | 53.09 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 53.88 | 52.97 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 55.17 | 52.89 |
| KRH32099 | Soybean | nucleus | 56.47 | 52.82 |
| KRG96977 | Soybean | nucleus | 52.16 | 52.61 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 53.88 | 52.52 |
| Bra040122.1-P | Field mustard | nucleus | 50.86 | 52.44 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 54.74 | 52.26 |
| KRH68738 | Soybean | nucleus | 54.74 | 52.26 |
| CDX89832 | Canola | nucleus | 50.43 | 52.23 |
| CDY18214 | Canola | nucleus | 50.0 | 51.79 |
| Bra015298.1-P | Field mustard | nucleus | 50.0 | 51.79 |
| Solyc09g083290.2.1 | Tomato | nucleus | 52.59 | 51.69 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 53.45 | 51.67 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 53.45 | 51.67 |
| Bra032520.1-P | Field mustard | nucleus | 50.43 | 51.54 |
| CDY32537 | Canola | nucleus | 50.43 | 51.32 |
| PGSC0003DMT400015610 | Potato | nucleus | 52.59 | 51.26 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 52.16 | 51.05 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 54.74 | 51.0 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 50.0 | 50.88 |
| AT4G14550.2 | Thale cress | nucleus | 51.29 | 50.85 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 53.88 | 50.81 |
| KRH67289 | Soybean | nucleus | 55.6 | 50.79 |
| Bra030560.1-P | Field mustard | nucleus | 50.0 | 50.66 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 50.0 | 50.66 |
| Solyc01g097290.2.1 | Tomato | nucleus | 54.74 | 50.6 |
| KRG95616 | Soybean | nucleus | 54.74 | 50.4 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 49.57 | 50.22 |
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 37.93 | 48.89 |
| KRH71337 | Soybean | nucleus | 34.05 | 46.47 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 39.22 | 45.96 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 44.83 | 45.02 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 45.26 | 43.75 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 32.76 | 43.18 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 39.66 | 42.99 |
| CDY50750 | Canola | nucleus, plastid | 53.88 | 42.96 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 32.76 | 41.99 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 41.81 | 40.93 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 37.5 | 40.47 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 54.74 | 40.32 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 56.03 | 39.27 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 39.66 | 35.52 |
| TraesCS1D01G398400.1 | Wheat | nucleus | 37.93 | 33.33 |
| CDY63072 | Canola | nucleus | 51.29 | 29.9 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF21 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS5D01G392000 | EnsemblPlants:TraesCS5D01G392000.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:460393900..460396047
Molecular Weight (calculated)
24803.5 Da
IEP (calculated)
8.362
GRAVY (calculated)
-0.571
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGADVDVGT ELRLGLPGGG AEAAKAGKRG YEDTIDLKLT LPTGGMQEDS AGKPEPAADK AERPAEAAAA DPEKPPAPKA QAVGWPPVRS YRRNAMTVQS
101: VKIKKEEETE KQQPAGAAAG ANGSNFVKVS MDGAPYLRKV DLKMYNTYKD LSIALQKMFS TFTATGNEGK MVEAVNGSDV VTTYEDKDGD WMLVGDVPWE
201: MFVASCKRLR IMKGSEAIGL APRAKDKYKN KS
101: VKIKKEEETE KQQPAGAAAG ANGSNFVKVS MDGAPYLRKV DLKMYNTYKD LSIALQKMFS TFTATGNEGK MVEAVNGSDV VTTYEDKDGD WMLVGDVPWE
201: MFVASCKRLR IMKGSEAIGL APRAKDKYKN KS
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.