Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G390200.1 | Wheat | plastid | 94.32 | 95.4 |
| TraesCS1B01G418400.1 | Wheat | nucleus | 84.09 | 90.61 |
| KXG22521 | Sorghum | nucleus | 79.92 | 75.63 |
| HORVU1Hr1G086070.6 | Barley | plastid | 87.5 | 73.8 |
| Zm00001d009532_P001 | Maize | nucleus | 76.52 | 71.89 |
| Os05t0559400-01 | Rice | nucleus | 75.76 | 71.17 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 77.27 | 70.59 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 62.12 | 63.32 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 46.97 | 51.67 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 45.08 | 48.57 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 40.53 | 45.15 |
| KRH74730 | Soybean | plastid | 26.14 | 42.86 |
| GSMUA_Achr10P... | Banana | nucleus | 47.35 | 42.81 |
| Solyc03g120500.2.1 | Tomato | nucleus | 44.32 | 42.09 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 28.79 | 41.99 |
| PGSC0003DMT400006548 | Potato | plastid | 40.91 | 41.38 |
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 28.03 | 41.11 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 27.27 | 40.91 |
| KRH23426 | Soybean | nucleus | 46.97 | 40.39 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 48.86 | 40.31 |
| KRH09902 | Soybean | nucleus | 48.48 | 40.13 |
| CDY06836 | Canola | nucleus | 38.26 | 40.08 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 32.2 | 39.53 |
| PGSC0003DMT400001013 | Potato | nucleus | 41.67 | 39.43 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 29.55 | 39.39 |
| Bra011082.1-P | Field mustard | nucleus | 43.18 | 39.31 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 46.97 | 38.75 |
| Solyc12g007230.1.1 | Tomato | nucleus | 43.18 | 38.64 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 31.06 | 38.32 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 33.33 | 37.93 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 35.98 | 37.7 |
| AT4G29080.1 | Thale cress | nucleus | 43.18 | 37.38 |
| KRH60250 | Soybean | nucleus | 40.53 | 37.28 |
| KRH44313 | Soybean | nucleus | 45.45 | 37.27 |
| KRH39325 | Soybean | nucleus | 43.18 | 37.13 |
| KRH47242 | Soybean | nucleus | 44.7 | 36.99 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 36.74 | 30.79 |
| KRH41538 | Soybean | golgi, plasma membrane | 40.15 | 29.69 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF9 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS1D01G398400 | EnsemblPlants:TraesCS1D01G398400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:-:465519870..465523545
Molecular Weight (calculated)
27625.4 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.441
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPNLEARD YIGLGPAAPA PSASSCSSSA SGEAGPHLAL RLGLPGRDEP EAAVDAALTL GPAPATANVP HRGGAKRGFA DSLLDRTAPA AGAGGEEDKQ
101: KGEAAAAAGA GAPPAAKAQV VGWPPVRSYR KNTLAANATK TKAENEGRSE AGCCYVKVSM DGAPYLRKVD LKTYSSYDNL SLELEKMFSC FITGKSSSCK
201: TSTRDRLTDG SRADALQDQE YVLTYEDKDA DWMLVGDLPW DLFTTTCRKL RIMRGSDAAG MAPR
101: KGEAAAAAGA GAPPAAKAQV VGWPPVRSYR KNTLAANATK TKAENEGRSE AGCCYVKVSM DGAPYLRKVD LKTYSSYDNL SLELEKMFSC FITGKSSSCK
201: TSTRDRLTDG SRADALQDQE YVLTYEDKDA DWMLVGDLPW DLFTTTCRKL RIMRGSDAAG MAPR
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.