Factsheet for VIT_11s0016g03540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_02s0025g01740.t01
VIT_04s0079g00200.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_07s0005g02550.t01
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0016g03540.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29080.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT4G29080.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT4G29080.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT4G29080.1	VIT_02s0025g01740.t01	AT1G34390.1	21734647
AT4G29080.1	VIT_09s0002g03410.t01	AT1G51950.1	21734647
AT4G29080.1	VIT_09s0002g05150.t01	AT1G52830.1	21734647
AT4G29080.1	VIT_07s0005g02550.t01	AT3G62100.1	21734647
AT4G29080.1	VIT_05s0020g04680.t01	AT4G14560.1	21734647
AT4G29080.1	VIT_05s0020g04680.t01	AT4G14560.1	21798944
AT4G29080.1	VIT_11s0016g03540.t01	AT4G29080.1	21734647
AT4G29080.1	VIT_04s0079g00200.t01	AT5G37020.1	21734647
AT4G29080.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39325	Soybean	nucleus	71.25	74.27
KRH60250	Soybean	nucleus	65.62	73.17
GSMUA_Achr10P...	Banana	nucleus	62.5	71.94
KRH74730	Soybean	plastid	35.94	71.43
VIT_09s0002g04080.t01	Wine grape	nucleus	70.62	70.62
GSMUA_Achr2P15340_001	Banana	nucleus	54.06	70.61
GSMUA_Achr10P...	Banana	nucleus	63.75	69.86
GSMUA_Achr9P06290_001	Banana	nucleus	59.38	69.34
GSMUA_Achr10P...	Banana	nucleus	59.38	68.35
GSMUA_Achr6P26730_001	Banana	nucleus	57.81	66.31
GSMUA_Achr3P03400_001	Banana	nucleus	64.38	66.03
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	35.0	65.88
GSMUA_Achr7P10930_001	Banana	nucleus	54.38	65.17
Solyc12g007230.1.1	Tomato	nucleus	59.38	64.41
PGSC0003DMT400001013	Potato	nucleus	55.94	64.16
CDY06836	Canola	nucleus	49.69	63.1
Bra011082.1-P	Field mustard	nucleus	56.88	62.76
AT4G29080.1	Thale cress	nucleus	59.38	62.3
GSMUA_Achr2P09210_001	Banana	nucleus	47.5	61.29
TraesCS7A01G331100.1	Wheat	nucleus	45.94	61.25
TraesCS7D01G339300.1	Wheat	nucleus	45.62	60.83
Os06t0335500-01	Rice	nucleus	50.31	60.53
EER89802	Sorghum	cytosol	46.56	59.84
TraesCS7B01G242800.1	Wheat	nucleus	45.62	59.84
Zm00001d037774_P001	Maize	cytosol	45.31	59.43
Os05t0230700-01	Rice	nucleus	47.5	59.14
OQU77659	Sorghum	nucleus	45.94	59.04
KRH41538	Soybean	golgi, plasma membrane	65.62	58.82
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	44.38	58.44
VIT_05s0020g04680.t01	Wine grape	nucleus	30.62	58.33
VIT_07s0141g00270.t01	Wine grape	nucleus	33.75	58.06
HORVU3Hr1G031460.1	Barley	cytosol	41.25	57.39
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	41.88	56.3
TraesCS3A01G155200.1	Wheat	cytosol	42.5	55.51
TraesCS3D01G162700.1	Wheat	cytosol	40.94	55.27
TraesCS3B01G181500.1	Wheat	cytosol	42.19	55.1
Os01t0231000-01	Rice	nucleus	44.69	54.37
VIT_14s0030g02310.t01	Wine grape	nucleus	33.44	53.77
HORVU0Hr1G021630.1	Barley	cytosol, mitochondrion, nucleus	30.31	52.72
TraesCS3B01G303900.1	Wheat	nucleus, plastid	39.06	48.83
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	32.81	48.61
TraesCS1B01G418400.1	Wheat	nucleus	37.19	48.57
Os01t0675700-01	Rice	nucleus	40.94	48.34
TraesCS3A01G270000.1	Wheat	nucleus, plastid	39.38	48.28
TraesCS3D01G269700.1	Wheat	nucleus, plastid	39.06	48.26
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	28.75	47.92
TraesCS1A01G390200.1	Wheat	plastid	39.06	47.89
Os05t0559400-01	Rice	nucleus	41.56	47.33
TraesCS1D01G398400.1	Wheat	nucleus	38.75	46.97
Zm00001d043878_P001	Maize	nucleus, plastid	39.38	46.84
KXG33104	Sorghum	nucleus, plastid	40.0	46.21
HORVU3Hr1G062160.2	Barley	nucleus, plastid	37.5	46.15
KXG22521	Sorghum	nucleus	39.06	44.8
Zm00001d009532_P001	Maize	nucleus	39.06	44.48
Zm00001d038980_P001	Maize	cytosol, nucleus, plastid	39.06	43.25
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	54.69	42.68
Zm00001d010411_P001	Maize	cytosol, endoplasmic reticulum, nucleus	42.19	41.03
HORVU1Hr1G086070.6	Barley	plastid	37.19	38.02
VIT_09s0002g05160.t01	Wine grape	nucleus	33.44	36.39
HORVU3Hr1G088810.1	Barley	plastid	26.56	35.87
Zm00001d011588_P003	Maize	nucleus, plastid	38.12	35.78
Zm00001d024008_P001	Maize	mitochondrion	26.88	24.71

Protein Annotations

EntrezGene:100254204	wikigene:100254204	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CCB51505	ProteinID:CCB51505.1	UniProt:F6HH09	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100254204
wikigene:LOC100254204	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF39
SUPFAM:SSF54277	TIGR:TC55033	TIGR:TC62674	UniParc:UPI00015C9206	ArrayExpress:VIT_11s0016g03540	EnsemblPlantsGene:VIT_11s0016g03540
EnsemblPlants:VIT_11s0016g03540.t01	unigene:Vvi.1665	RefSeq:XP_002284118	RefSeq:XP_002284118.1	RefSeq:XP_002284128	RefSeq:XP_002284128.1
SEG:seg	:	:	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HH09]

Coordinates

chr11:-:2881444..2885216

Molecular Weight (calculated)

34298.7 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.525

Length

320 amino acids

Sequence
(BLAST)

001: MSKQLEHDYI GLSEVSSMES SEKLTTDSEG SNGLNLKATE LRLGLPGSES PERIDSVGGL DKNGYPLGVL KNLVSGAKRG FSDAIDGGSG KWVFSGSGGS
101: ETDLTKGGGL FSPRGGNGGG KHLGGSESNN QHSSLGTPVK NDVVPQSPKP MHEKKPQISA PAAKAQVVGW PPIRSFRKNS MASNLPKNDE DAEGKLGSGC
201: LYVKVSMDGA PYLRKVDLKL YSTYMELSSA LEKMFSCFTI GQCGSNGVPI RDGLSESRLM DLLHGSEYVL TYEDKDGDWM LVGDVPWEMF TDSCKRMRIM
301: KSSEAIGLAP RAMEKCKSRN

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.