Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037774_P001 | Maize | cytosol | 65.65 | 88.52 |
| OQU77659 | Sorghum | nucleus | 66.57 | 87.95 |
| Os05t0230700-01 | Rice | nucleus | 60.18 | 77.04 |
| GSMUA_Achr10P... | Banana | nucleus | 44.68 | 52.88 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 41.34 | 50.94 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 41.34 | 49.63 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 41.03 | 48.39 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 36.17 | 47.98 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 37.69 | 46.1 |
| Solyc03g120500.2.1 | Tomato | nucleus | 38.91 | 46.04 |
| PGSC0003DMT400006548 | Potato | plastid | 36.47 | 45.98 |
| Zm00001d033976_P002 | Maize | nucleus | 32.83 | 45.57 |
| Zm00001d013071_P001 | Maize | nucleus | 24.92 | 45.3 |
| KRH23426 | Soybean | nucleus | 42.25 | 45.28 |
| Zm00001d013302_P002 | Maize | nucleus | 31.31 | 45.18 |
| KRH09902 | Soybean | nucleus | 43.16 | 44.51 |
| Bra011082.1-P | Field mustard | nucleus | 38.6 | 43.79 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 42.25 | 43.44 |
| PGSC0003DMT400001013 | Potato | nucleus | 36.78 | 43.37 |
| CDY06836 | Canola | nucleus | 33.13 | 43.25 |
| Zm00001d009532_P001 | Maize | nucleus | 36.78 | 43.06 |
| KRH60250 | Soybean | nucleus | 37.39 | 42.86 |
| Solyc12g007230.1.1 | Tomato | nucleus | 38.3 | 42.71 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 41.03 | 42.19 |
| AT4G29080.1 | Thale cress | nucleus | 38.6 | 41.64 |
| Zm00001d018973_P001 | Maize | nucleus | 25.53 | 41.58 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 36.47 | 41.52 |
| KRH39325 | Soybean | nucleus | 38.6 | 41.37 |
| KRH74730 | Soybean | plastid | 20.06 | 40.99 |
| KRH47242 | Soybean | nucleus | 38.6 | 39.81 |
| KRH44313 | Soybean | nucleus | 38.91 | 39.75 |
| Zm00001d036918_P001 | Maize | nucleus | 23.71 | 39.39 |
| Zm00001d013707_P001 | Maize | nucleus | 26.75 | 39.29 |
| Zm00001d039624_P001 | Maize | nucleus | 25.84 | 38.64 |
| Zm00001d041418_P001 | Maize | nucleus | 26.75 | 38.26 |
| Zm00001d030993_P001 | Maize | nucleus | 22.49 | 37.19 |
| Zm00001d033319_P001 | Maize | nucleus | 25.53 | 37.17 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 37.39 | 36.07 |
| KRH41538 | Soybean | golgi, plasma membrane | 37.69 | 34.73 |
| Zm00001d008749_P002 | Maize | cytosol | 22.8 | 34.25 |
| Zm00001d041416_P001 | Maize | nucleus | 31.61 | 30.23 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 25.23 | 25.94 |
| Zm00001d024008_P001 | Maize | mitochondrion | 26.44 | 25.0 |
Protein Annotations
| EntrezGene:100274569 | Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6FQU1 | ProteinID:AQK93990.1 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF17 | SUPFAM:SSF54277 | UniParc:UPI00084494BB | EnsemblPlantsGene:Zm00001d010411 | EnsemblPlants:Zm00001d010411_P001 | EnsemblPlants:Zm00001d010411_T001 |
| SEG:seg | : | : | : | : | : |
Description
Aux/IAA-transcription factor 38Auxin-responsive protein IAA27
Coordinates
chr8:-:113492914..113496509
Molecular Weight (calculated)
35908.8 Da
IEP (calculated)
7.996
GRAVY (calculated)
-0.425
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLELDYI GLSPPAAAAA AENDELKGTE LRLGLPGSGS PDRRVVAATA TTLDLLPAKG AKRGFSDEAP PPSPVATAGK GKKVAEEEYD EKKVAATPQP
101: AAKAQVVGWP PVCNYRKNTM TTTQLEGSKE DGDAKQGQGF LYVKVSMDGA PYLRKIDLKT YKNYKDLSTA LEKMFSGFST GKDGSSEYRK DGEYVLTYED
201: KDGDWMLVGD VPWEMFAGSC RRLRIMKGSD AIGLGMFVLL LCLVYRRANH VVLLQGQPIS PRTATRTVAS YPYTVRYEGG DAVTCRDLYE NRKSLLTAMT
301: CEKNSGLWSA LEWLGTSSMD KTRYSINCC
101: AAKAQVVGWP PVCNYRKNTM TTTQLEGSKE DGDAKQGQGF LYVKVSMDGA PYLRKIDLKT YKNYKDLSTA LEKMFSGFST GKDGSSEYRK DGEYVLTYED
201: KDGDWMLVGD VPWEMFAGSC RRLRIMKGSD AIGLGMFVLL LCLVYRRANH VVLLQGQPIS PRTATRTVAS YPYTVRYEGG DAVTCRDLYE NRKSLLTAMT
301: CEKNSGLWSA LEWLGTSSMD KTRYSINCC
001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
Arabidopsis Description
IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.