Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043878_P001 | Maize | nucleus, plastid | 42.24 | 54.65 |
| KXG33104 | Sorghum | nucleus, plastid | 40.52 | 50.9 |
| TraesCS3B01G303900.1 | Wheat | nucleus, plastid | 34.48 | 46.88 |
| TraesCS3A01G270000.1 | Wheat | nucleus, plastid | 35.06 | 46.74 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 34.77 | 46.72 |
| Os01t0675700-01 | Rice | nucleus | 35.92 | 46.13 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 33.33 | 44.62 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 41.38 | 42.23 |
| HORVU3Hr1G088810.1 | Barley | plastid | 28.45 | 41.77 |
| Zm00001d009532_P001 | Maize | nucleus | 33.33 | 41.28 |
| KRH74730 | Soybean | plastid | 18.39 | 39.75 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 32.76 | 39.45 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 25.57 | 36.33 |
| Zm00001d037774_P001 | Maize | cytosol | 25.0 | 35.66 |
| Zm00001d013071_P001 | Maize | nucleus | 17.82 | 34.25 |
| CDY06836 | Canola | nucleus | 24.71 | 34.13 |
| PGSC0003DMT400006548 | Potato | plastid | 24.43 | 32.57 |
| Zm00001d008749_P002 | Maize | cytosol | 20.4 | 32.42 |
| Zm00001d018973_P001 | Maize | nucleus | 18.68 | 32.18 |
| Zm00001d033976_P002 | Maize | nucleus | 21.84 | 32.07 |
| Zm00001d013302_P002 | Maize | nucleus | 20.4 | 31.14 |
| Zm00001d039624_P001 | Maize | nucleus | 19.54 | 30.91 |
| PGSC0003DMT400001013 | Potato | nucleus | 24.71 | 30.82 |
| Solyc03g120500.2.1 | Tomato | nucleus | 24.43 | 30.58 |
| Zm00001d036918_P001 | Maize | nucleus | 17.24 | 30.3 |
| GSMUA_Achr10P... | Banana | nucleus | 25.29 | 30.14 |
| Bra011082.1-P | Field mustard | nucleus | 25.0 | 30.0 |
| KRH23426 | Soybean | nucleus | 26.15 | 29.64 |
| Zm00001d013707_P001 | Maize | nucleus | 18.97 | 29.46 |
| Zm00001d033319_P001 | Maize | nucleus | 18.97 | 29.2 |
| Zm00001d041418_P001 | Maize | nucleus | 18.97 | 28.7 |
| KRH09902 | Soybean | nucleus | 26.15 | 28.53 |
| Solyc12g007230.1.1 | Tomato | nucleus | 24.14 | 28.47 |
| AT4G29080.1 | Thale cress | nucleus | 24.71 | 28.2 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 25.86 | 28.12 |
| KRH60250 | Soybean | nucleus | 22.99 | 27.87 |
| KRH44313 | Soybean | nucleus | 25.57 | 27.64 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 24.71 | 26.88 |
| KRH47242 | Soybean | nucleus | 24.43 | 26.65 |
| Zm00001d030993_P001 | Maize | nucleus | 15.23 | 26.63 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 25.0 | 26.44 |
| KRH39325 | Soybean | nucleus | 23.28 | 26.38 |
| Zm00001d041416_P001 | Maize | nucleus | 23.28 | 23.55 |
| KRH41538 | Soybean | golgi, plasma membrane | 23.28 | 22.69 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 17.82 | 19.38 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6IX97 | ProteinID:AQK40542.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF16 | SUPFAM:SSF54277 | TMHMM:TMhelix | UniParc:UPI0008456622 | EnsemblPlantsGene:Zm00001d024008 |
| EnsemblPlants:Zm00001d024008_P001 | EnsemblPlants:Zm00001d024008_T001 | SEG:seg | : | : | : |
Description
Aux/IAA-transcription factor 42Auxin-responsive protein IAA27
Coordinates
chr10:+:36379483..36384610
Molecular Weight (calculated)
39213.8 Da
IEP (calculated)
9.134
GRAVY (calculated)
-0.480
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MQCALDPCRA QVVGWPPVRN YRKNTLAAAT ASRSKAPTEE AASGAGPMYV KVSMDGAPYL RKVDIKMYSS YEDLSLALEK MFSCFIAGQS GLHKSSSKDR
101: LTNGSKVDAL KDQEYVLTYE DKDADWMLVG DLPWDYFTSI CRKLKIMRGS DAATAVIIRI VSFLGLLLLF YYKYSQHGRE RSRGQAWTHC QNRKFGSVPS
201: INTSSCGRPS TKEEINEVHQ EKQKFVEGAK KEVRDRCARR MQQDVQPRTG GGYQLQAHRR HSDRRARAPQ YPLASALAEE LSSSPKCDNY LCDANRSGEL
301: PNNLYLLVAQ FFLVEVWALD TMVVNSLEKG VLFPFFFGRR SGLEPESP
101: LTNGSKVDAL KDQEYVLTYE DKDADWMLVG DLPWDYFTSI CRKLKIMRGS DAATAVIIRI VSFLGLLLLF YYKYSQHGRE RSRGQAWTHC QNRKFGSVPS
201: INTSSCGRPS TKEEINEVHQ EKQKFVEGAK KEVRDRCARR MQQDVQPRTG GGYQLQAHRR HSDRRARAPQ YPLASALAEE LSSSPKCDNY LCDANRSGEL
301: PNNLYLLVAQ FFLVEVWALD TMVVNSLEKG VLFPFFFGRR SGLEPESP
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.