Factsheet for Solyc03g120500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006548	Potato	plastid	89.21	95.02
GSMUA_Achr2P15340_001	Banana	nucleus	54.32	61.63
GSMUA_Achr10P...	Banana	nucleus	61.15	61.15
VIT_09s0002g04080.t01	Wine grape	nucleus	68.35	59.38
GSMUA_Achr10P...	Banana	nucleus	58.99	58.99
GSMUA_Achr10P...	Banana	nucleus	61.51	58.56
Solyc06g084070.2.1	Tomato	nucleus, plastid	32.73	58.33
GSMUA_Achr9P06290_001	Banana	nucleus	57.19	58.03
GSMUA_Achr6P26730_001	Banana	nucleus	57.19	56.99
Zm00001d037774_P001	Maize	cytosol	50.0	56.97
Solyc06g008590.2.1	Tomato	nucleus	42.09	56.25
OQU77659	Sorghum	nucleus	50.36	56.22
GSMUA_Achr7P10930_001	Banana	nucleus	53.96	56.18
GSMUA_Achr3P03400_001	Banana	nucleus	62.95	56.09
KRH23426	Soybean	nucleus	61.87	56.03
Os05t0230700-01	Rice	nucleus	51.08	55.25
TraesCS7D01G339300.1	Wheat	nucleus	47.12	54.58
TraesCS7A01G331100.1	Wheat	nucleus	47.12	54.58
KRH09902	Soybean	nucleus	62.23	54.23
Solyc04g054280.1.1	Tomato	nucleus	32.37	54.22
HORVU3Hr1G031460.1	Barley	cytosol	44.6	53.91
EER89802	Sorghum	cytosol	48.2	53.82
TraesCS7B01G242800.1	Wheat	nucleus	47.12	53.69
GSMUA_Achr2P09210_001	Banana	nucleus	47.48	53.23
Solyc06g053830.2.1	Tomato	nucleus	41.73	53.21
Os06t0335500-01	Rice	nucleus	50.72	53.01
Os01t0231000-01	Rice	nucleus	49.64	52.47
TraesCS3D01G162700.1	Wheat	cytosol	44.6	52.32
KRH47242	Soybean	nucleus	58.99	51.41
Solyc09g083290.2.1	Tomato	nucleus	43.53	51.27
KRH44313	Soybean	nucleus	59.35	51.24
TraesCS3B01G181500.1	Wheat	cytosol	44.96	51.02
TraesCS3A01G155200.1	Wheat	cytosol	44.96	51.02
Solyc12g007230.1.1	Tomato	nucleus	53.96	50.85
Solyc09g065850.2.1	Tomato	nucleus	33.81	50.81
Solyc06g053840.2.1	Tomato	nucleus	34.53	50.53
Solyc09g083280.2.1	Tomato	nucleus	34.89	49.49
Solyc01g097290.2.1	Tomato	nucleus	43.17	47.81
Solyc06g008580.2.1	Tomato	nucleus	32.37	47.37
HORVU0Hr1G021630.1	Barley	cytosol, mitochondrion, nucleus	30.94	46.74
TraesCS3B01G303900.1	Wheat	nucleus, plastid	42.81	46.48
Solyc03g120380.2.1	Tomato	nucleus	31.65	45.83
TraesCS3D01G269700.1	Wheat	nucleus, plastid	42.45	45.56
TraesCS1A01G390200.1	Wheat	plastid	42.45	45.21
TraesCS3A01G270000.1	Wheat	nucleus, plastid	42.45	45.21
TraesCS1B01G418400.1	Wheat	nucleus	39.57	44.9
Solyc04g076850.2.1	Tomato	nucleus	56.12	44.7
TraesCS1D01G398400.1	Wheat	nucleus	42.09	44.32
Os01t0675700-01	Rice	nucleus	43.17	44.28
Zm00001d043878_P001	Maize	nucleus, plastid	42.81	44.24
Os05t0559400-01	Rice	nucleus	44.6	44.13
HORVU3Hr1G062160.2	Barley	nucleus, plastid	41.01	43.85
KXG33104	Sorghum	nucleus, plastid	43.53	43.68
Solyc03g120390.2.1	Tomato	nucleus, plastid	39.57	43.65
KXG22521	Sorghum	nucleus	42.81	42.65
Zm00001d009532_P001	Maize	nucleus	42.81	42.35
Zm00001d038980_P001	Maize	cytosol, nucleus, plastid	43.53	41.87
Zm00001d010411_P001	Maize	cytosol, endoplasmic reticulum, nucleus	46.04	38.91
HORVU3Hr1G088810.1	Barley	plastid	30.58	35.87
HORVU1Hr1G086070.6	Barley	plastid	40.29	35.78
Zm00001d011588_P003	Maize	nucleus, plastid	42.09	34.31
Zm00001d024008_P001	Maize	mitochondrion	30.58	24.43

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPX1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379450	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF39
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc03g120500.2	EnsemblPlants:Solyc03g120500.2.1	UniParc:UPI000243DC0E	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPX1]

Coordinates

chr3:-:68877662..68879777

Molecular Weight (calculated)

30548.1 Da

IEP (calculated)

7.370

GRAVY (calculated)

-0.547

Length

278 amino acids

Sequence
(BLAST)

001: MSVPLEHDYI GLSEPSLMER SSDKISSSSS SSVLNLKETE LRLGLPGSES HGVSLFGKDL DPLSNFTSRT KRGFSDAIDA SGKSDLSINC RSEADRENGN
101: LLFSPKRGNG GSNPVEEKKP IPHTSKAQVV GWPPIRSFRK NTLATKKNDD EGRTGSSCLY VKVSMDGAPY LRKVDIKTYS NYAALSSALE KMFSCFSIGQ
201: CASDKIPGQE KLSESHLMDL LNGSEYVLTY EDKDGDWMLV GDVPWEMFID SCKRLRIMKS SEAIGLAPRA INKCKNQN

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.