Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P26730_001 | Banana | nucleus | 83.21 | 81.72 |
| GSMUA_Achr10P... | Banana | nucleus | 70.07 | 69.06 |
| GSMUA_Achr10P... | Banana | nucleus | 70.07 | 69.06 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 61.68 | 68.98 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 61.31 | 67.74 |
| GSMUA_Achr10P... | Banana | nucleus | 69.71 | 65.41 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 61.68 | 63.3 |
| GSMUA_Achr3P03400_001 | Banana | nucleus | 71.53 | 62.82 |
| TraesCS7A01G331100.1 | Wheat | nucleus | 54.74 | 62.5 |
| EER89802 | Sorghum | cytosol | 56.57 | 62.25 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 54.38 | 62.08 |
| TraesCS7B01G242800.1 | Wheat | nucleus | 54.74 | 61.48 |
| Zm00001d037774_P001 | Maize | cytosol | 54.01 | 60.66 |
| HORVU3Hr1G031460.1 | Barley | cytosol | 50.73 | 60.43 |
| OQU77659 | Sorghum | nucleus | 54.74 | 60.24 |
| Os06t0335500-01 | Rice | nucleus | 58.39 | 60.15 |
| Os05t0230700-01 | Rice | nucleus | 56.2 | 59.92 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 29.56 | 59.56 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 69.34 | 59.38 |
| KRH39325 | Soybean | nucleus | 66.06 | 58.96 |
| PGSC0003DMT400006548 | Potato | plastid | 55.84 | 58.62 |
| KRH60250 | Soybean | nucleus | 60.95 | 58.19 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 67.88 | 58.12 |
| KRH23426 | Soybean | nucleus | 64.96 | 57.98 |
| Os01t0231000-01 | Rice | nucleus | 55.11 | 57.41 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 49.63 | 57.38 |
| Solyc03g120500.2.1 | Tomato | nucleus | 58.03 | 57.19 |
| KRH74730 | Soybean | plastid | 33.21 | 56.52 |
| TraesCS3A01G155200.1 | Wheat | cytosol | 50.37 | 56.33 |
| TraesCS3B01G181500.1 | Wheat | cytosol | 50.37 | 56.33 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 25.18 | 55.2 |
| HORVU0Hr1G021630.1 | Barley | cytosol, mitochondrion, nucleus | 36.86 | 54.89 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 33.58 | 54.76 |
| KRH09902 | Soybean | nucleus | 63.5 | 54.55 |
| GSMUA_Achr10P... | Banana | nucleus | 46.72 | 53.11 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 34.67 | 52.49 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 47.45 | 52.42 |
| PGSC0003DMT400001013 | Potato | nucleus | 53.28 | 52.33 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 46.35 | 52.26 |
| Solyc12g007230.1.1 | Tomato | nucleus | 56.2 | 52.2 |
| Bra011082.1-P | Field mustard | nucleus | 55.11 | 52.07 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 32.48 | 52.05 |
| CDY06836 | Canola | nucleus | 47.81 | 51.98 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 37.23 | 51.52 |
| AT4G29080.1 | Thale cress | nucleus | 56.57 | 50.82 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 34.67 | 50.53 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 43.8 | 49.79 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 44.16 | 49.59 |
| GSMUA_Achr11P... | Banana | nucleus | 31.39 | 49.43 |
| KRH44313 | Soybean | nucleus | 57.66 | 49.07 |
| KRH47242 | Soybean | nucleus | 56.93 | 48.9 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 35.04 | 47.29 |
| KRH41538 | Soybean | golgi, plasma membrane | 61.31 | 47.06 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 42.34 | 45.85 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 33.21 | 43.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.94 | 42.47 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 49.63 | 41.34 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 33.94 | 34.19 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 30.29 | 27.95 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G06290_001 | EnsemblPlants:GSMUA_Achr9P06290_001 |
| EnsemblPlants:GSMUA_Achr9T06290_001 | InterPro:IPR000270 | UniProt:M0TXY8 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF39 | SUPFAM:SSF54277 | UniParc:UPI000296CF22 | SEG:seg | : |
Description
Auxin-responsive protein IAA27 [Source:GMGC_GENE;Acc:GSMUA_Achr9G06290_001]
Coordinates
chr9:-:4028179..4031339
Molecular Weight (calculated)
29502.3 Da
IEP (calculated)
7.139
GRAVY (calculated)
-0.536
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPPLEHDYL GLPESPGELS GNLKDTELRL GLPGSESPER FDGGGAGLTL GLPKNFVSGA KRGFSDAIDG PDAWGLPGVK GSEEERGKGG EKANGKLLGP
101: PSVGKDDGGA AKVAPSPKAQ VVGWPPIRSY RKNTMAANPS KNKDDAKGKQ GLECLYVKVS MDGAPYLRKV DLKTYSNYKE LSLALEKMFT CFTIGQCGSY
201: GMTGREILTE GRVMDLLLGS EYVLTYEDKD GDWMLVGDVP WEMFTDSCRR LRIMKGSDAI GIAPRAMEKS KSRN
101: PSVGKDDGGA AKVAPSPKAQ VVGWPPIRSY RKNTMAANPS KNKDDAKGKQ GLECLYVKVS MDGAPYLRKV DLKTYSNYKE LSLALEKMFT CFTIGQCGSY
201: GMTGREILTE GRVMDLLLGS EYVLTYEDKD GDWMLVGDVP WEMFTDSCRR LRIMKGSDAI GIAPRAMEKS KSRN
001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.