Factsheet for GSMUA_AchrUn_randomP02040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P02960_001	Banana	nucleus	79.0	83.57
TraesCS7A01G371500.1	Wheat	cytosol, nucleus, plastid	50.23	60.77
TraesCS7D01G351400.1	Wheat	cytosol, nucleus, plastid	49.77	60.56
Os01t0178500-02	Rice	nucleus	53.88	59.3
TraesCS7B01G256100.1	Wheat	cytosol, nucleus, plastid	48.86	59.12
TraesCS1D01G119500.1	Wheat	nucleus	52.97	58.59
TraesCS1B01G138100.1	Wheat	cytosol	52.97	58.59
HORVU1Hr1G025670.3	Barley	nucleus	52.51	57.5
GSMUA_Achr4P08960_001	Banana	nucleus	70.32	56.62
TraesCS3B01G140700.1	Wheat	cytosol	49.77	56.48
KXG20284	Sorghum	plastid	47.95	56.45
TraesCS3A01G121300.2	Wheat	nucleus	52.05	56.44
TraesCS3D01G123400.1	Wheat	nucleus	44.29	55.11
EES19135	Sorghum	nucleus, plastid	50.68	54.95
Zm00001d039624_P001	Maize	nucleus	53.88	53.64
KXG31707	Sorghum	nucleus	53.42	53.18
KRH23505	Soybean	nucleus	44.29	53.01
KRH09810	Soybean	nucleus	45.21	52.38
Zm00001d036918_P001	Maize	nucleus	47.03	52.02
Os05t0178600-01	Rice	nucleus	50.23	51.89
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	49.77	50.46
HORVU7Hr1G084940.3	Barley	plastid	42.92	50.0
PGSC0003DMT400006798	Potato	nucleus	48.4	50.0
GSMUA_Achr4P05200_001	Banana	mitochondrion	28.31	49.6
Zm00001d008749_P002	Maize	cytosol	49.32	49.32
TraesCS1A01G118400.2	Wheat	cytosol	44.75	48.28
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	29.68	47.79
HORVU3Hr1G022540.7	Barley	cytosol, nucleus	43.84	44.44
GSMUA_Achr5P03110_001	Banana	nucleus	33.79	44.05
GSMUA_Achr9P24330_001	Banana	nucleus	33.79	43.27
GSMUA_Achr10P...	Banana	nucleus	47.49	43.15
GSMUA_Achr4P21020_001	Banana	nucleus	48.86	43.15
GSMUA_Achr8P20610_001	Banana	nucleus	47.95	43.03
GSMUA_Achr9P25550_001	Banana	nucleus	47.03	42.39
Solyc03g120390.2.1	Tomato	nucleus, plastid	48.4	42.06
GSMUA_Achr4P22530_001	Banana	nucleus	34.7	41.99
GSMUA_Achr4P22520_001	Banana	nucleus	47.95	41.5
GSMUA_Achr9P10700_001	Banana	nucleus	45.66	41.49
GSMUA_Achr11P...	Banana	nucleus	32.42	40.8
GSMUA_Achr4P21030_001	Banana	nucleus	35.62	39.39
GSMUA_Achr8P20620_001	Banana	nucleus	33.33	38.83
GSMUA_Achr2P15340_001	Banana	nucleus	43.38	38.78
GSMUA_Achr7P13250_001	Banana	nucleus	51.6	38.05
GSMUA_Achr2P12630_001	Banana	nucleus	33.79	36.45
GSMUA_Achr10P...	Banana	nucleus	46.12	36.33
VIT_09s0002g05160.t01	Wine grape	nucleus	47.49	35.37
GSMUA_Achr2P09210_001	Banana	nucleus	39.73	35.08
GSMUA_Achr10P...	Banana	nucleus	45.66	34.25
GSMUA_Achr10P...	Banana	nucleus	43.38	34.17
GSMUA_Achr9P06290_001	Banana	nucleus	42.47	33.94
GSMUA_Achr7P10930_001	Banana	nucleus	41.1	33.71
GSMUA_Achr6P26730_001	Banana	nucleus	41.1	32.26
GSMUA_Achr3P03400_001	Banana	nucleus	44.75	31.41

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG02040_001	EnsemblPlants:GSMUA_AchrUn_randomP02040_001
EnsemblPlants:GSMUA_AchrUn_randomT02040_001	InterPro:IPR000270	UniProt:M0U5L6	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF34	SUPFAM:SSF54277	UniParc:UPI000295C473	SEG:seg	:

Description

Auxin-responsive protein IAA1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02040_001]

Coordinates

chrchrUn_random:-:9191217..9193580

Molecular Weight (calculated)

23889.0 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.487

Length

219 amino acids

Sequence
(BLAST)

001: MSTTESGNSS TESEVSGLDY EETQLTLAPP GGSKSEPERK RGFSESVDLR FGRPALEAHA KDPASGSSDG PVSGAGKSPA SNLFSAFDRA QVVGWPPVRS
101: FRRNALRSCT YVKVAVDGTP YLRKVDLDAY AGYQQLLIAL EEMFSCFTAR DYTNERRLVD PVNGAAYVPT YEDKDGDWML VGDVPWKMFV ASCKRLRLMK
201: SSEAVNLAPR TPQGCANAR

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.