CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039624_P001	Maize	nucleus	95.0	95.0
TraesCS3A01G121300.2	Wheat	nucleus	74.09	80.69
TraesCS3D01G123400.1	Wheat	nucleus	64.55	80.68
TraesCS3B01G140700.1	Wheat	cytosol	70.0	79.79
Zm00001d008749_P002	Maize	cytosol	72.27	72.6
EES19135	Sorghum	nucleus, plastid	64.55	70.3
HORVU3Hr1G022540.7	Barley	cytosol, nucleus	64.09	65.28
KXG20284	Sorghum	plastid	50.91	60.22
GSMUA_Achr9P02960_001	Banana	nucleus	52.27	55.56
GSMUA_AchrUn_...	Banana	nucleus	53.18	53.42
KRH23505	Soybean	nucleus	44.09	53.01
KRH09810	Soybean	nucleus	44.55	51.85
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	48.64	49.54
PGSC0003DMT400006798	Potato	nucleus	46.82	48.58
GSMUA_Achr4P08960_001	Banana	nucleus	51.36	41.54
Solyc03g120390.2.1	Tomato	nucleus, plastid	47.27	41.27
EER90734	Sorghum	cytosol, nucleus, plastid	33.64	39.78
EER90896	Sorghum	nucleus	42.27	39.57
OQU91311	Sorghum	cytosol, mitochondrion, nucleus	46.36	38.64
EER89802	Sorghum	cytosol	43.64	38.55
EES17334	Sorghum	cytosol	47.73	37.37
EER98076	Sorghum	cytosol, mitochondrion, nucleus	33.64	37.19
EER93778	Sorghum	cytosol, nucleus, plastid	37.27	36.28
VIT_09s0002g05160.t01	Wine grape	nucleus	47.27	35.37
GSMUA_Achr7P13250_001	Banana	nucleus	47.73	35.35
OQU77659	Sorghum	nucleus	40.0	35.34
EES16315	Sorghum	cytosol	36.36	32.79
KXG33104	Sorghum	nucleus, plastid	40.0	31.77
KXG22521	Sorghum	nucleus	38.64	30.47

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A1B6Q194	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EnsemblPlants:KXG31707	ProteinID:KXG31707	ProteinID:KXG31707.1	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF86	EnsemblPlantsGene:SORBI_3003G044900	SUPFAM:SSF54277	UniParc:UPI0001FCCD8D	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:4111857..4114700

Molecular Weight (calculated)

23635.6 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.366

Length

220 amino acids

Sequence
(BLAST)

001: MSVETERSST ESSAASGLDF EDTALTLTLR LPGSAPAPAA VAASLSSSSS SAFPDADRKR ASSDANPDRS SPLAASSDAA PAPKARVVGW PPVRSYRKNA
101: LADVAGSSKA NQAAKFVKVA VDGAPYLRKV DLQAYAGYDQ LLRALQDKFF SHFTIRKFAD DERKLVDAVN GTEYVPTYED KDGDWMLVGD VPWKMFVETC
201: QRLRLMKGSE AVNLAPRAAR

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.