Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037774_P001 | Maize | cytosol | 92.77 | 94.67 |
| Os05t0230700-01 | Rice | nucleus | 87.15 | 84.44 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 87.95 | 66.57 |
| EER89802 | Sorghum | cytosol | 63.45 | 63.45 |
| GSMUA_Achr10P... | Banana | nucleus | 63.45 | 56.83 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 59.04 | 55.06 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 60.24 | 54.74 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 60.24 | 53.76 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 52.21 | 52.42 |
| Solyc03g120500.2.1 | Tomato | nucleus | 56.22 | 50.36 |
| PGSC0003DMT400006548 | Potato | plastid | 52.61 | 50.19 |
| KRH23426 | Soybean | nucleus | 61.04 | 49.51 |
| KRH09902 | Soybean | nucleus | 62.25 | 48.59 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 61.04 | 47.5 |
| EER90896 | Sorghum | nucleus | 44.58 | 47.23 |
| PGSC0003DMT400001013 | Potato | nucleus | 52.61 | 46.95 |
| Bra011082.1-P | Field mustard | nucleus | 54.62 | 46.9 |
| CDY06836 | Canola | nucleus | 47.39 | 46.83 |
| KRH60250 | Soybean | nucleus | 53.82 | 46.69 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 59.04 | 45.94 |
| KXG33104 | Sorghum | nucleus, plastid | 51.0 | 45.85 |
| Solyc12g007230.1.1 | Tomato | nucleus | 54.22 | 45.76 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 36.55 | 45.73 |
| KRH39325 | Soybean | nucleus | 56.22 | 45.6 |
| KXG22521 | Sorghum | nucleus | 51.0 | 45.52 |
| KRH74730 | Soybean | plastid | 29.32 | 45.34 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 33.73 | 45.16 |
| AT4G29080.1 | Thale cress | nucleus | 54.62 | 44.59 |
| KRH47242 | Soybean | nucleus | 55.42 | 43.26 |
| KRH44313 | Soybean | nucleus | 55.02 | 42.55 |
| KXG20284 | Sorghum | plastid | 31.73 | 42.47 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 42.57 | 40.15 |
| KXG31707 | Sorghum | nucleus | 35.34 | 40.0 |
| EES17334 | Sorghum | cytosol | 44.98 | 39.86 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 35.74 | 39.38 |
| EES16315 | Sorghum | cytosol | 38.15 | 38.93 |
| EES19135 | Sorghum | nucleus, plastid | 30.92 | 38.12 |
| KRH41538 | Soybean | golgi, plasma membrane | 53.82 | 37.53 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1Z5R2A5 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EnsemblPlants:OQU77659 | ProteinID:OQU77659 | ProteinID:OQU77659.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF17 | EnsemblPlantsGene:SORBI_3009G085100 | SUPFAM:SSF54277 | UniParc:UPI0001C806E4 | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:+:14286163..14289650
Molecular Weight (calculated)
26779.6 Da
IEP (calculated)
8.338
GRAVY (calculated)
-0.639
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLELDYI GLSPQPAAAA AAADADDDLK GTELRLGLPG SGSPDRRVAA ATATTLELLP AKGAKRGFSD EAPPPSPAAA AGKGKKVAEE EDDDKKVAAT
101: PQPAAKAQVV GWPPIRSYRK NTMATTQLKG SKEDTEAKQG QGFLYVKVSM DGAPYLRKID LKTYKNYKDL STALEKMFSG FSTGKDGLSE YRKDGEYVLT
201: YEDKDGDWML VGDVPWEMFA DSCRRLRIMK GSDAIGLAPR AADKSKNRN
101: PQPAAKAQVV GWPPIRSYRK NTMATTQLKG SKEDTEAKQG QGFLYVKVSM DGAPYLRKID LKTYKNYKDL STALEKMFSG FSTGKDGLSE YRKDGEYVLT
201: YEDKDGDWML VGDVPWEMFA DSCRRLRIMK GSDAIGLAPR AADKSKNRN
001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
Arabidopsis Description
IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.