Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 52.23 | 81.66 |
| Os01t0190300-01 | Rice | nucleus | 41.9 | 63.03 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 38.27 | 59.57 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 37.43 | 58.26 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 38.83 | 55.16 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 37.15 | 54.29 |
| EES17832 | Sorghum | nucleus | 36.59 | 54.13 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 22.07 | 45.4 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 22.07 | 45.4 |
| CDX87072 | Canola | cytosol | 22.07 | 45.14 |
| Bra009867.1-P | Field mustard | cytosol | 22.07 | 44.89 |
| AT5G25890.1 | Thale cress | nucleus | 21.51 | 44.0 |
| Bra036557.1-P | Field mustard | nucleus | 21.23 | 43.43 |
| CDX87863 | Canola | nucleus | 28.49 | 40.16 |
| CDY43104 | Canola | nucleus | 29.33 | 39.33 |
| CDY19790 | Canola | cytosol | 21.23 | 38.97 |
| AT3G16500.1 | Thale cress | nucleus | 29.05 | 38.66 |
| AT1G51950.1 | Thale cress | nucleus | 28.77 | 38.58 |
| CDY64626 | Canola | cytosol | 28.77 | 38.29 |
| CDY22876 | Canola | nucleus | 26.82 | 37.94 |
| Bra018938.1-P | Field mustard | nucleus | 26.82 | 37.94 |
| CDY34957 | Canola | nucleus | 28.49 | 37.92 |
| Bra021184.1-P | Field mustard | nucleus | 28.49 | 37.92 |
| CDY46538 | Canola | nucleus | 28.49 | 37.78 |
| Bra014303.1-P | Field mustard | nucleus | 28.49 | 37.78 |
| CDY53439 | Canola | nucleus | 28.77 | 37.73 |
| CDX75884 | Canola | cytosol | 28.21 | 37.27 |
| CDY33844 | Canola | nucleus | 26.26 | 37.15 |
| PGSC0003DMT400006709 | Potato | nucleus | 29.33 | 37.1 |
| CDX92077 | Canola | nucleus | 29.05 | 36.49 |
| Bra022164.1-P | Field mustard | nucleus | 29.05 | 36.49 |
| CDX82399 | Canola | nucleus | 27.65 | 36.4 |
| Bra001634.1-P | Field mustard | nucleus | 27.65 | 36.4 |
| Solyc03g121060.2.1 | Tomato | nucleus | 28.77 | 35.89 |
| OQU84670 | Sorghum | nucleus | 28.77 | 35.27 |
| KRH09948 | Soybean | nucleus | 31.28 | 35.0 |
| KRH44271 | Soybean | nucleus | 28.21 | 32.27 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 31.01 | 32.17 |
| KRH47203 | Soybean | nucleus | 28.21 | 31.86 |
| KRH23388 | Soybean | nucleus | 30.73 | 31.79 |
| KXG22376 | Sorghum | nucleus | 28.21 | 29.28 |
| KXG33336 | Sorghum | nucleus | 29.61 | 29.04 |
| KXG19391 | Sorghum | nucleus | 15.92 | 27.94 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 32.4 | 26.42 |
| EES00605 | Sorghum | nucleus, plastid | 13.97 | 25.91 |
| EES13224 | Sorghum | nucleus | 17.32 | 25.73 |
| KXG31308 | Sorghum | cytosol | 13.69 | 24.87 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 18.44 | 22.3 |
| KXG28215 | Sorghum | nucleus | 16.76 | 16.76 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | EntrezGene:8078735 | UniProt:A0A1W0VVK6 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | EnsemblPlants:OQU86163 | ProteinID:OQU86163 | ProteinID:OQU86163.1 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF45 | EnsemblPlantsGene:SORBI_3003G035700 | SUPFAM:SSF54277 | unigene:Sbi.12505 |
| UniParc:UPI0009DC932A | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:3265232..3266748
Molecular Weight (calculated)
37074.9 Da
IEP (calculated)
9.412
GRAVY (calculated)
-0.104
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSRPSGLP KHSSPLPLSL AAFWSPRAPR ARAQHLCLFL SCSPLPLSLS LSLSLSLSLA GQAGGAAVPF LPAGRHPPLR SFTARYDSSC DHLLTVSLRD
101: AAAIMAWRGP LGAGDAGDSG LELSLGLPAY FAKPSSGLDV AAGEESGEAS AFAHQAANGS NGSKARVRPA PAAPVVGWPP VRSFRRNLAS SSSSRPSPPS
201: SSGHHKVQDG GAHKGGLFVK INMDGVPIGR KVDLTAYGGY ADLSAAVGKL FRGLLAAQRD PAATAGGEAA AEEEVQEPVI GGDYTLVYED DEGDRVLVGD
301: VPWEMFVATA KRLRVLKSSD VPASSVSPHL PSPSVPASEA FARQVHIFAP ATAKPMSN
101: AAAIMAWRGP LGAGDAGDSG LELSLGLPAY FAKPSSGLDV AAGEESGEAS AFAHQAANGS NGSKARVRPA PAAPVVGWPP VRSFRRNLAS SSSSRPSPPS
201: SSGHHKVQDG GAHKGGLFVK INMDGVPIGR KVDLTAYGGY ADLSAAVGKL FRGLLAAQRD PAATAGGEAA AEEEVQEPVI GGDYTLVYED DEGDRVLVGD
301: VPWEMFVATA KRLRVLKSSD VPASSVSPHL PSPSVPASEA FARQVHIFAP ATAKPMSN
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Arabidopsis Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.