Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G32280.1 | KXG19536 | AT1G19220.1 | 21734647 |
| AT4G32280.1 | KXG19536 | AT5G20730.1 | 21734647 |
| AT4G32280.1 | EES11567 | AT5G57420.1 | 21734647 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000288_P001 | Maize | cytosol | 78.92 | 81.73 |
| Zm00001d045203_P001 | Maize | cytosol | 76.96 | 72.69 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 32.35 | 64.71 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 48.04 | 61.25 |
| Os06t0166500-01 | Rice | nucleus | 53.43 | 59.56 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 49.02 | 59.52 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 23.53 | 58.54 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 44.12 | 56.96 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 41.67 | 56.67 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 46.08 | 54.65 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 31.86 | 54.62 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 47.06 | 54.24 |
| KXG31308 | Sorghum | cytosol | 48.53 | 50.25 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 32.84 | 46.21 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 18.14 | 40.66 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 33.33 | 29.96 |
| KRH03666 | Soybean | cytosol | 28.92 | 29.65 |
| PGSC0003DMT400079375 | Potato | cytosol | 28.92 | 29.21 |
| KRH20139 | Soybean | nucleus | 29.41 | 29.13 |
| Solyc07g008020.2.1 | Tomato | cytosol | 27.94 | 29.08 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 25.98 | 28.8 |
| PGSC0003DMT400035770 | Potato | cytosol | 30.88 | 28.77 |
| KRH61758 | Soybean | nucleus | 30.88 | 27.88 |
| KRH52428 | Soybean | nucleus | 30.88 | 27.75 |
| Solyc08g021820.2.1 | Tomato | nucleus | 30.39 | 27.31 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 30.88 | 26.03 |
| EES00605 | Sorghum | nucleus, plastid | 24.51 | 25.91 |
| CDX68829 | Canola | nucleus | 27.94 | 25.0 |
| Bra011332.1-P | Field mustard | nucleus | 27.94 | 24.68 |
| CDX75231 | Canola | nucleus | 27.94 | 24.68 |
| AT4G32280.1 | Thale cress | cytosol | 29.9 | 24.3 |
| CDX72351 | Canola | nucleus | 28.92 | 23.89 |
| CDY13478 | Canola | nucleus | 28.43 | 23.87 |
| Bra023958.1-P | Field mustard | nucleus | 28.43 | 23.87 |
| EES17832 | Sorghum | nucleus | 26.96 | 22.73 |
| EES13224 | Sorghum | nucleus | 26.47 | 22.41 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 31.86 | 21.96 |
| OQU84670 | Sorghum | nucleus | 28.43 | 19.86 |
| OQU86163 | Sorghum | golgi, plastid | 27.94 | 15.92 |
| KXG28215 | Sorghum | nucleus | 26.47 | 15.08 |
| KXG22376 | Sorghum | nucleus | 24.51 | 14.49 |
| KXG33336 | Sorghum | nucleus | 25.0 | 13.97 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A194YIG7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EnsemblPlants:KXG19391 | ProteinID:KXG19391 | ProteinID:KXG19391.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | EnsemblPlantsGene:SORBI_3010G052700 | SUPFAM:SSF54277 | UniParc:UPI0007F29D6D | SEG:seg |
Description
hypothetical protein
Coordinates
chr10:-:4116012..4118068
Molecular Weight (calculated)
21761.8 Da
IEP (calculated)
6.630
GRAVY (calculated)
-0.359
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MELELGLALP NPYQSPMAAG GELVGLLSGS AGACGKKRVF GDAFGAAAKA TLLPLFVHED GDGGSGDHDD VDHDPSNKKK RLVGWPPVKC ARRRSCGGGG
101: GYVKVKMEGV AIGRKVDVSL HGSYQELLRT LERMFPSANQ QGAGAGADAG HAEEEEVVAS HAERRRRHPY VVTYEDGEGD WLLVGDDVPW EVFVKSVKRL
201: KILA
101: GYVKVKMEGV AIGRKVDVSL HGSYQELLRT LERMFPSANQ QGAGAGADAG HAEEEEVVAS HAERRRRHPY VVTYEDGEGD WLLVGDDVPW EVFVKSVKRL
201: KILA
001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
Arabidopsis Description
IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.