Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH52428 | Soybean | nucleus | 92.04 | 91.63 |
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 17.7 | 43.96 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 43.36 | 43.17 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 22.12 | 42.02 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 18.14 | 40.2 |
| PGSC0003DMT400035770 | Potato | cytosol | 37.61 | 38.81 |
| Solyc08g021820.2.1 | Tomato | nucleus | 36.73 | 36.56 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 23.01 | 35.86 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 12.83 | 35.37 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 37.17 | 34.71 |
| CDX68829 | Canola | nucleus | 34.96 | 34.65 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 24.34 | 34.38 |
| Bra011332.1-P | Field mustard | nucleus | 34.96 | 34.2 |
| CDX75231 | Canola | nucleus | 34.96 | 34.2 |
| Bra023958.1-P | Field mustard | nucleus | 36.28 | 33.74 |
| CDY13478 | Canola | nucleus | 36.28 | 33.74 |
| CDX72351 | Canola | nucleus | 36.73 | 33.6 |
| AT4G32280.1 | Thale cress | cytosol | 36.73 | 33.07 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 23.01 | 32.91 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 25.22 | 32.76 |
| TraesCS7B01G029000.1 | Wheat | cytosol | 24.78 | 32.56 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 21.24 | 32.0 |
| KRH03666 | Soybean | cytosol | 27.88 | 31.66 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 23.89 | 31.4 |
| Os06t0166500-01 | Rice | nucleus | 25.22 | 31.15 |
| KRH20139 | Soybean | nucleus | 28.32 | 31.07 |
| KXG19391 | Sorghum | nucleus | 27.88 | 30.88 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 23.89 | 30.86 |
| TraesCS7B01G029100.1 | Wheat | nucleus | 23.89 | 30.51 |
| TraesCS6B01G411000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.89 | 30.51 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 22.57 | 30.36 |
| Os02t0805100-01 | Rice | nucleus | 24.34 | 30.22 |
| Zm00001d000288_P001 | Maize | cytosol | 26.11 | 29.95 |
| KXG31308 | Sorghum | cytosol | 25.22 | 28.93 |
| Zm00001d045203_P001 | Maize | cytosol | 26.55 | 27.78 |
| Zm00001d018414_P001 | Maize | nucleus | 23.89 | 26.21 |
| KRH33660 | Soybean | plastid | 15.93 | 20.34 |
| KRH67461 | Soybean | nucleus | 21.68 | 20.0 |
| KRG96613 | Soybean | plastid | 15.49 | 19.77 |
| KRH69143 | Soybean | plastid | 15.49 | 19.44 |
| KRH68346 | Soybean | plastid | 15.49 | 19.44 |
| KRH32251 | Soybean | nucleus | 23.45 | 18.47 |
| KRH19441 | Soybean | endoplasmic reticulum, vacuole | 19.91 | 18.44 |
| KRH19625 | Soybean | nucleus | 23.45 | 18.21 |
| KRG95739 | Soybean | nucleus | 20.8 | 17.47 |
| KRH02508 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 19.47 | 16.92 |
| KRH09948 | Soybean | nucleus | 23.89 | 16.88 |
| KRH47203 | Soybean | nucleus | 23.45 | 16.72 |
| KRH44271 | Soybean | nucleus | 22.12 | 15.97 |
| KRH23388 | Soybean | nucleus | 23.01 | 15.03 |
Protein Annotations
| EntrezGene:100802759 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02002188 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlantsGene:GLYMA_04G066300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | UniProt:I1JUC1 | InterPro:IPR000270 | EnsemblPlants:KRH61758 | ProteinID:KRH61758 | ProteinID:KRH61758.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF44 | SUPFAM:SSF54277 |
| UniParc:UPI00023BF7E4 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:5525939..5528040
Molecular Weight (calculated)
26249.2 Da
IEP (calculated)
10.029
GRAVY (calculated)
-0.746
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDLVLALP TQNSVEEFKL NKSKQIVSLQ LWRASCGSES EKRVKHNKRS FEESFGHFLK PLPLLVWSGQ PNEEDDRSEK VQRNIHIPNK NGDEENHLVG
101: WPPVKSWRRK ELHQQHPARG RIRNDRIQAN ENQSRGPNSL YVKVNMEGVA IGRKINLRLF NSYQTLTSSL ISMFAKYQKF EEVGESYTLT FQNEQGEWLQ
201: VGHVPWQSFI GTVRRLVILR NGSETI
101: WPPVKSWRRK ELHQQHPARG RIRNDRIQAN ENQSRGPNSL YVKVNMEGVA IGRKINLRLF NSYQTLTSSL ISMFAKYQKF EEVGESYTLT FQNEQGEWLQ
201: VGHVPWQSFI GTVRRLVILR NGSETI
001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F
Arabidopsis Description
IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.