CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051911_P002	Maize	nucleus	87.84	88.44
Os02t0817600-02	Rice	nucleus	73.65	77.58
TraesCS6B01G432800.1	Wheat	nucleus	70.61	75.45
TraesCS6A01G392600.3	Wheat	cytosol, nucleus, plastid	69.59	72.28
TraesCS6D01G378300.1	Wheat	cytosol, nucleus, plastid	68.24	71.38
HORVU6Hr1G091260.3	Barley	nucleus	67.57	71.17
GSMUA_Achr11P...	Banana	nucleus	40.88	40.33
KXG31308	Sorghum	cytosol	22.64	34.01
EES00605	Sorghum	nucleus, plastid	21.28	32.64
KXG19391	Sorghum	nucleus	21.96	31.86
EES17832	Sorghum	nucleus	23.99	29.34
EES13224	Sorghum	nucleus	21.96	26.97
OQU84670	Sorghum	nucleus	23.99	24.32
KXG33336	Sorghum	nucleus	24.32	19.73
KXG22376	Sorghum	nucleus	22.3	19.13
OQU86163	Sorghum	golgi, plastid	22.3	18.44
KXG28215	Sorghum	nucleus	21.28	17.6

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:8056449	UniProt:A0A194YSY9	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	EnsemblPlants:KXG31359	ProteinID:KXG31359	ProteinID:KXG31359.1	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	EnsemblPlantsGene:SORBI_3004G345600	SUPFAM:SSF54277	unigene:Sbi.11534
UniParc:UPI0007F1BDBB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:67551585..67553615

Molecular Weight (calculated)

31250.7 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.517

Length

296 amino acids

Sequence
(BLAST)

001: MRGGGAGPTA AFISGDPPPA AAEEVEENSG GEGDEEVVVV GQDDDDLELG LCLGSKKQQP SPAPCRILTA RDLQPGSLSP DSSVSSSSPA AGAGAAAPSK
101: RAKADAAPNA TTSPGTAVPG HPQSSYGVVG WPPIRTFRMN SLFNQAKENA SEAGTKKPTV ESDMQEDKEE SKKGRVVGWV KVNMEGDIIG RKVDLNAHRS
201: YKTLASALEL MFMKPSISLC TSSSSKSLKL LDNSSEYQLT YEDRDGDWML VGDVPWEMFV GSVKRLKIMR TSDANGLGPR FQGPHKPTAA CTRGRI

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.