Factsheet for TraesCS3B01G140700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G123400.1	Wheat	nucleus	85.49	93.75
TraesCS3A01G121300.2	Wheat	nucleus	97.93	93.56
HORVU3Hr1G022540.7	Barley	cytosol, nucleus	83.42	74.54
KXG31707	Sorghum	nucleus	79.79	70.0
Zm00001d039624_P001	Maize	nucleus	78.76	69.09
TraesCS1B01G138100.1	Wheat	cytosol	69.43	67.68
TraesCS7B01G256100.1	Wheat	cytosol, nucleus, plastid	56.48	60.22
Zm00001d008749_P002	Maize	cytosol	67.88	59.82
GSMUA_Achr9P02960_001	Banana	nucleus	55.96	52.17
KRH23505	Soybean	nucleus	47.67	50.27
GSMUA_AchrUn_...	Banana	nucleus	56.48	49.77
KRH09810	Soybean	nucleus	47.67	48.68
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	50.26	44.91
PGSC0003DMT400006798	Potato	nucleus	48.7	44.34
Solyc03g120390.2.1	Tomato	nucleus, plastid	49.74	38.1
TraesCS5B01G058500.1	Wheat	nucleus	49.22	37.7
GSMUA_Achr4P08960_001	Banana	nucleus	52.85	37.5
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	33.68	36.72
TraesCS5B01G386800.1	Wheat	nucleus	44.04	36.32
TraesCS5B01G381900.1	Wheat	cytosol, mitochondrion, nucleus	44.56	33.99
GSMUA_Achr7P13250_001	Banana	nucleus	51.81	33.67
TraesCS7B01G242800.1	Wheat	nucleus	42.49	33.61
TraesCS5B01G058800.1	Wheat	cytosol	36.79	33.18
TraesCS3B01G181500.1	Wheat	cytosol	40.93	32.24
TraesCS5B01G381800.1	Wheat	nucleus	35.23	32.08
VIT_09s0002g05160.t01	Wine grape	nucleus	48.7	31.97
TraesCS3B01G303900.1	Wheat	nucleus, plastid	39.9	30.08
TraesCS1B01G418400.1	Wheat	nucleus	36.27	28.57

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000270
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF86	SUPFAM:SSF54277
EnsemblPlantsGene:TraesCS3B01G140700	EnsemblPlants:TraesCS3B01G140700.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:+:126920341..126922716

Molecular Weight (calculated)

20955.7 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.444

Length

193 amino acids

Sequence
(BLAST)

001: MSAETERSST ESSAASGLDF EDTALTLTLR LPGDPDRKRG ASSSSSCSLA DRSSLLAEAP PAPKERVVGW PPVRSFRKNA LENVAAGSTR AAAAPAKFVK
101: VAVDGAPYLR KVNLRDYAGY DQLLRALQGK FANDEMKLVD AVNGTEYVPT YEDKDGDWML VGDVPWKMFE EACQRVRLMK NSEAVNVAPR AAR

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.