Factsheet for TraesCS3D01G123400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G121300.2	Wheat	nucleus	99.43	86.63
TraesCS3B01G140700.1	Wheat	cytosol	93.75	85.49
HORVU3Hr1G022540.7	Barley	cytosol, nucleus	96.02	78.24
KXG31707	Sorghum	nucleus	80.68	64.55
Zm00001d039624_P001	Maize	nucleus	79.55	63.64
TraesCS1D01G119500.1	Wheat	nucleus	70.45	62.63
Zm00001d008749_P002	Maize	cytosol	70.45	56.62
TraesCS7D01G351400.1	Wheat	cytosol, nucleus, plastid	52.84	51.67
GSMUA_Achr9P02960_001	Banana	nucleus	54.55	46.38
GSMUA_AchrUn_...	Banana	nucleus	55.11	44.29
KRH23505	Soybean	nucleus	46.02	44.26
KRH09810	Soybean	nucleus	46.02	42.86
PGSC0003DMT400006798	Potato	nucleus	48.3	40.09
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	48.86	39.81
GSMUA_Achr4P08960_001	Banana	nucleus	53.98	34.93
Solyc03g120390.2.1	Tomato	nucleus, plastid	49.43	34.52
TraesCS5D01G069300.1	Wheat	nucleus	48.3	33.73
TraesCS5D01G392000.1	Wheat	nucleus	43.18	32.76
TraesCS5D01G449400.1	Wheat	nucleus	32.95	32.04
GSMUA_Achr7P13250_001	Banana	nucleus	52.27	30.98
TraesCS7D01G339300.1	Wheat	nucleus	42.05	30.83
TraesCS5D01G388200.1	Wheat	nucleus	37.5	30.7
TraesCS5D01G069200.1	Wheat	cytosol	35.8	29.44
TraesCS3D01G269700.1	Wheat	nucleus, plastid	42.61	28.96
VIT_09s0002g05160.t01	Wine grape	nucleus	47.73	28.57
TraesCS3D01G162700.1	Wheat	cytosol	38.07	28.27
TraesCS1D01G398400.1	Wheat	nucleus	40.91	27.27
TraesCS5D01G388300.2	Wheat	cytosol	46.59	26.03

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000270
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF86	SUPFAM:SSF54277
EnsemblPlantsGene:TraesCS3D01G123400	EnsemblPlants:TraesCS3D01G123400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:+:81206416..81207637

Molecular Weight (calculated)

19090.5 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.394

Length

176 amino acids

Sequence
(BLAST)

001: MSAETERSST ESSAASGLDF EDTALTLTLR LPGDPDRKRG ASSSSSCSLA DRSSLLAEAP PAPKARVVGW PPVRSFRKNA LENVAAGSTR AACAPAKFVK
101: VAVDGAPYLR KVNLRDYAGY DQLLRALQGK FCSHFTIRKF ANDEMKLVDA VNGTEYVPTY EDKDGDWMLV GDVPWK

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.