Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G381800.1 | Wheat | nucleus | 95.81 | 97.17 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 93.95 | 95.28 |
| Os03t0633800-01 | Rice | nucleus | 70.7 | 67.26 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 93.02 | 63.69 |
| Zm00001d033319_P001 | Maize | nucleus | 64.19 | 61.06 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 63.72 | 60.62 |
| Zm00001d013707_P001 | Maize | nucleus | 60.47 | 58.04 |
| KRH34375 | Soybean | cytosol, nucleus | 32.56 | 57.38 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 56.74 | 57.01 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 33.02 | 56.8 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 45.12 | 56.73 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 40.0 | 55.13 |
| PGSC0003DMT400051896 | Potato | plastid | 39.07 | 54.9 |
| GSMUA_Achr11P... | Banana | nucleus | 42.33 | 52.3 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 45.58 | 51.58 |
| Solyc06g053840.2.1 | Tomato | nucleus | 45.58 | 51.58 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 47.44 | 51.26 |
| AT4G14560.1 | Thale cress | nucleus | 40.0 | 51.19 |
| PGSC0003DMT400049677 | Potato | nucleus | 42.79 | 50.27 |
| Solyc09g065850.2.1 | Tomato | nucleus | 42.79 | 49.73 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 41.86 | 49.72 |
| CDX94876 | Canola | nucleus | 39.53 | 49.71 |
| KRH71338 | Soybean | nucleus | 46.51 | 49.51 |
| CDY36883 | Canola | nucleus | 39.53 | 49.42 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 38.6 | 49.4 |
| CDX92972 | Canola | nucleus | 39.07 | 49.12 |
| Bra001899.1-P | Field mustard | nucleus | 39.07 | 49.12 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 42.33 | 48.92 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 42.33 | 48.92 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 42.33 | 48.92 |
| CDY53735 | Canola | nucleus | 39.07 | 48.84 |
| Solyc04g054280.1.1 | Tomato | nucleus | 37.67 | 48.8 |
| PGSC0003DMT400015655 | Potato | nucleus | 44.19 | 48.72 |
| Solyc09g083280.2.1 | Tomato | nucleus | 44.19 | 48.47 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 41.86 | 48.39 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 41.86 | 48.39 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 40.47 | 48.33 |
| Bra033890.1-P | Field mustard | nucleus | 38.6 | 48.26 |
| CDY10692 | Canola | nucleus | 38.6 | 48.26 |
| Bra023771.1-P | Field mustard | nucleus | 38.14 | 47.95 |
| CDY35493 | Canola | nucleus | 38.14 | 47.95 |
| Bra039732.1-P | Field mustard | nucleus | 38.14 | 47.95 |
| CDY10069 | Canola | nucleus | 40.93 | 47.83 |
| Bra032521.1-P | Field mustard | nucleus | 40.0 | 47.78 |
| CDY10346 | Canola | nucleus | 38.14 | 47.67 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 36.28 | 47.56 |
| KRH69048 | Soybean | nucleus | 42.33 | 47.4 |
| CDY40837 | Canola | nucleus | 37.67 | 47.37 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.86 | 47.12 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 41.86 | 47.12 |
| PGSC0003DMT400013662 | Potato | cytosol | 41.4 | 46.84 |
| KRH32098 | Soybean | nucleus | 37.67 | 46.55 |
| KRG92430 | Soybean | nucleus | 41.86 | 46.39 |
| Solyc06g008580.2.1 | Tomato | nucleus | 40.47 | 45.79 |
| Bra027504.1-P | Field mustard | nucleus | 40.47 | 45.55 |
| KRG95613 | Soybean | nucleus | 42.79 | 45.1 |
| KRH67288 | Soybean | nucleus | 42.79 | 44.66 |
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 33.49 | 40.0 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 40.47 | 37.5 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 30.7 | 37.5 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 33.49 | 36.36 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 40.47 | 36.25 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 42.33 | 36.11 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 39.07 | 35.44 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 40.0 | 33.2 |
| TraesCS1D01G398400.1 | Wheat | nucleus | 39.53 | 32.2 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 42.79 | 31.83 |
| AT3G23030.2 | Thale cress | vacuole | 37.67 | 31.03 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 40.47 | 27.62 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF25 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS5D01G388200 | EnsemblPlants:TraesCS5D01G388200.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:457679910..457680754
Molecular Weight (calculated)
22944.1 Da
IEP (calculated)
8.020
GRAVY (calculated)
-0.478
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MEATDSLLMA TELRLGLPGT DDKPHKITSV MSPPATPRGR KRTLDAFEAT ASDEADRSDD VETAPPVAKA QVVGWPPVRS YRKSCFQAAA SKSKAKKADE
101: ASSNNTPSAA APASTNGSFV KVSMDGAPYL RKVDMRMYKG YRELREALEA MFVCFSGADG GASNGGANPA EYAITYEDKD GDLMLVGDVP FDMFSGTCKK
201: LRIIKRSEAT GLGSK
101: ASSNNTPSAA APASTNGSFV KVSMDGAPYL RKVDMRMYKG YRELREALEA MFVCFSGADG GASNGGANPA EYAITYEDKD GDLMLVGDVP FDMFSGTCKK
201: LRIIKRSEAT GLGSK
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.