Factsheet for Bra015297.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89833	Canola	cytosol, nucleus, plastid	100.0	100.0
CDY18213	Canola	cytosol, nucleus, plastid	93.55	93.55
Bra032521.1-P	Field mustard	nucleus	81.18	83.89
KRH34375	Soybean	cytosol, nucleus	50.0	76.23
Bra027504.1-P	Field mustard	nucleus	74.73	72.77
Bra001899.1-P	Field mustard	nucleus	59.14	64.33
Bra023771.1-P	Field mustard	nucleus	59.14	64.33
Bra033890.1-P	Field mustard	nucleus	59.14	63.95
Solyc09g083280.2.1	Tomato	nucleus	66.13	62.76
PGSC0003DMT400042074	Potato	cytosol, nucleus, plastid	63.98	62.63
Solyc06g053840.2.1	Tomato	nucleus	63.98	62.63
PGSC0003DMT400015655	Potato	nucleus	65.59	62.56
Bra039732.1-P	Field mustard	nucleus	54.84	59.65
KRG92430	Soybean	nucleus	61.83	59.28
Solyc04g054280.1.1	Tomato	nucleus	52.15	58.43
GSMUA_Achr4P05200_001	Banana	mitochondrion	39.25	58.4
VIT_05s0020g04680.t01	Wine grape	nucleus	52.15	57.74
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	41.94	57.35
PGSC0003DMT400034978	Potato	cytosol, mitochondrion, nucleus	50.54	57.32
KRH69048	Soybean	nucleus	59.14	57.29
GSMUA_Achr5P03110_001	Banana	nucleus	51.08	56.55
AT1G04240.2	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	86.56	55.71
GSMUA_Achr9P24330_001	Banana	nucleus	49.46	53.8
GSMUA_Achr4P22530_001	Banana	nucleus	51.61	53.04
GSMUA_Achr11P...	Banana	nucleus	47.31	50.57
GSMUA_Achr4P21030_001	Banana	nucleus	53.76	50.51
GSMUA_Achr8P20620_001	Banana	nucleus	50.54	50.0
Os12t0601400-01	Rice	nucleus	51.08	48.22
Bra026755.1-P	Field mustard	nucleus	40.32	48.08
TraesCS5A01G058700.1	Wheat	cytosol	53.23	46.26
TraesCS5B01G058800.1	Wheat	cytosol	53.23	46.26
TraesCS5D01G069200.1	Wheat	cytosol	53.23	46.26
GSMUA_Achr2P12630_001	Banana	nucleus	50.0	45.81
EER98076	Sorghum	cytosol, mitochondrion, nucleus	48.39	45.23
Zm00001d013071_P001	Maize	nucleus	43.55	44.75
Zm00001d018973_P001	Maize	nucleus	48.39	44.55
Bra040122.1-P	Field mustard	nucleus	52.69	43.56
Bra001598.1-P	Field mustard	nucleus	45.16	43.3
EER90734	Sorghum	cytosol, nucleus, plastid	43.01	43.01
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	45.16	42.64
TraesCS5D01G449400.1	Wheat	nucleus	41.4	42.54
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	40.32	42.37
TraesCS5D01G388200.1	Wheat	nucleus	48.92	42.33
Bra040398.1-P	Field mustard	nucleus	52.15	41.99
Bra015298.1-P	Field mustard	nucleus	50.54	41.96
Bra027232.1-P	Field mustard	nucleus	43.55	41.75
Bra039855.1-P	Field mustard	nucleus	52.15	41.63
EER93778	Sorghum	cytosol, nucleus, plastid	50.54	41.59
TraesCS5B01G381800.1	Wheat	nucleus	47.31	41.51
Bra030560.1-P	Field mustard	nucleus	51.08	41.48
Bra032520.1-P	Field mustard	nucleus	50.54	41.41
Zm00001d041418_P001	Maize	nucleus	51.08	41.3
TraesCS5A01G378200.1	Wheat	nucleus	46.77	41.04
Os03t0633800-01	Rice	nucleus	49.46	40.71
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	52.69	40.5
Zm00001d013707_P001	Maize	nucleus	48.39	40.18
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	50.54	39.66
Bra037824.1-P	Field mustard	plastid	41.4	39.49
Zm00001d033319_P001	Maize	nucleus	47.85	39.38
EES16315	Sorghum	cytosol	51.08	38.93
Os07t0182400-01	Rice	plastid	45.7	38.81
Os03t0797800-01	Rice	nucleus	40.86	38.58
Zm00001d030993_P001	Maize	nucleus	40.86	38.19
Bra018993.1-P	Field mustard	nucleus	41.4	37.93
HORVU5Hr1G106350.2	Barley	plastid	42.47	35.11
Bra011082.1-P	Field mustard	nucleus	52.69	33.79
Bra024406.1-P	Field mustard	nucleus	41.94	33.48
Bra030219.1-P	Field mustard	nucleus	47.31	33.08
HORVU5Hr1G014290.1	Barley	mitochondrion	44.62	32.42
HORVU5Hr1G093640.1	Barley	mitochondrion	50.0	29.62
Bra031850.1-P	Field mustard	mitochondrion	46.24	29.45
Zm00001d034463_P001	Maize	extracellular, golgi	41.94	24.38

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra015297	EnsemblPlants:Bra015297.1
EnsemblPlants:Bra015297.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4DFM4	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF11	SUPFAM:SSF54277	UniParc:UPI000254409E	:	:

Description

AT1G04240 (E=3e-090) SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2); transcription factor

Coordinates

chrA10:+:2609841..2610563

Molecular Weight (calculated)

21096.3 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.587

Length

186 amino acids

Sequence
(BLAST)

001: MDEFVNLKET ELRLGLPGTD NVSEEIERVS CNKRALQGDT ENETESSMMK METCPPRKAQ IVGWPPVRSS RKNIIQTKKN ESDSEGGRGV YVKVSMDGAP
101: YLRKIDLSCY KGYKELLKAL EIMFNFSVGE YFEREGYKGS DFVPTYEDKD GDWMLIGDVP WEMFVCTCKR LRIMKGSEAK GLGCGV

Best Arabidopsis Sequence Match ( AT1G04240.2 )
(BLAST)

001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.