Factsheet for Bra024406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001634.1-P
Bra009867.1-P
Bra012190.1-P
Bra014303.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra021184.1-P
Bra022164.1-P
Bra024406.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra034234.1-P
Bra036557.1-P
Bra037824.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65670.1	Bra026755.1-P	AT1G15580.1	21734647
AT5G65670.1	Bra012190.1-P	AT1G19850.1	22096563
AT5G65670.1	Bra016492.1-P	AT1G19850.1	22096563
AT5G65670.1	Bra025775.1-P	AT1G19850.1	22096563
AT5G65670.1	Bra017362.1-P	AT1G34390.1	21734647
AT5G65670.1	Bra018124.1-P	AT1G34390.1	21734647
AT5G65670.1	Bra027944.1-P	AT1G34390.1	21734647
AT5G65670.1	Bra034234.1-P	AT1G34390.1	21734647
AT5G65670.1	Bra014303.1-P	AT1G51950.1	21734647
AT5G65670.1	Bra018938.1-P	AT1G51950.1	21734647
AT5G65670.1	Bra001634.1-P	AT3G16500.1	21734647
AT5G65670.1	Bra021184.1-P	AT3G16500.1	21734647
AT5G65670.1	Bra022164.1-P	AT3G16500.1	21734647
AT5G65670.1	Bra039732.1-P	AT4G14560.1	21734647
AT5G65670.1	Bra039732.1-P	AT4G14560.1	9342315
AT5G65670.1	Bra009867.1-P	AT5G25890.1	21734647
AT5G65670.1	Bra036557.1-P	AT5G25890.1	21734647
AT5G65670.1	Bra024406.1-P	AT5G65670.1	21734647
AT5G65670.1	Bra037824.1-P	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037824.1-P	Field mustard	plastid	73.82	88.21
CDY08767	Canola	cytosol, nucleus, plastid	99.57	69.88
CDY45607	Canola	cytosol, nucleus, plastid	96.14	68.09
Bra031850.1-P	Field mustard	mitochondrion	75.11	59.93
AT5G65670.1	Thale cress	nucleus	86.27	59.47
Bra030219.1-P	Field mustard	nucleus	52.79	46.24
Bra015298.1-P	Field mustard	nucleus	44.21	45.98
Bra032520.1-P	Field mustard	nucleus	44.64	45.81
Bra040398.1-P	Field mustard	nucleus	45.06	45.45
Bra033890.1-P	Field mustard	nucleus	33.48	45.35
Bra001899.1-P	Field mustard	nucleus	33.05	45.03
Bra023771.1-P	Field mustard	nucleus	33.05	45.03
Bra030560.1-P	Field mustard	nucleus	44.21	44.98
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	45.49	44.73
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.92	44.21
Bra039855.1-P	Field mustard	nucleus	44.21	44.21
Bra040122.1-P	Field mustard	nucleus	42.06	43.56
Bra032521.1-P	Field mustard	nucleus	33.05	42.78
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	33.48	41.94
Bra039732.1-P	Field mustard	nucleus	30.47	41.52
Bra027504.1-P	Field mustard	nucleus	33.48	40.84
Bra001598.1-P	Field mustard	nucleus	33.48	40.21
Bra027232.1-P	Field mustard	nucleus	33.05	39.69
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	32.62	38.58
Bra026755.1-P	Field mustard	nucleus	25.75	38.46
Bra011082.1-P	Field mustard	nucleus	46.78	37.59
Bra018993.1-P	Field mustard	nucleus	30.9	35.47

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra024406	EnsemblPlants:Bra024406.1
EnsemblPlants:Bra024406.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4E6K2	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF24	SUPFAM:SSF54277	UniParc:UPI000253F576	SEG:seg	:

Description

AT5G65670 (E=3e-107) IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor

Coordinates

chrA06:+:15581499..15582649

Molecular Weight (calculated)

25352.5 Da

IEP (calculated)

9.753

GRAVY (calculated)

-0.434

Length

233 amino acids

Sequence
(BLAST)

001: MCSSSSHKNI ASGNKRGFSD TMDKVPVYTE KNWMFPEAVL ATQSVIKKEV AQNLPKGKLS TTNNSSSPPA AKAQIVGWPP VRSYRKNTLA TTCKNSDEVD
101: GKPGSGPLFV KVSMDGAPYL RKVDLRSYTN YGELSAALEK MFTTFTLGQC GTSGATGKDV RNETKLKDLL NGKDYVLTYE DKDGDWMLVG DFSWEIFIGV
201: CKKLKIMKGC DAIGLAAAPA PAPRAMEKSK MRA

Best Arabidopsis Sequence Match ( AT5G65670.1 )
(BLAST)

001: MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAAAPRA MEKSKMRA

Arabidopsis Description

IAA9Auxin-responsive protein IAA9 [Source:UniProtKB/Swiss-Prot;Acc:Q38827]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.