Factsheet for Bra021117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra002479.1-P
Bra009867.1-P
Bra012190.1-P
Bra012910.1-P
Bra013748.1-P
Bra014303.1-P
Bra015289.1-P
Bra016492.1-P
Bra016517.1-P
Bra018938.1-P
Bra019255.1-P
Bra020125.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra024406.1-P
Bra025720.1-P
Bra025775.1-P
Bra026755.1-P
Bra027232.1-P
Bra028110.1-P
Bra029990.1-P
Bra033886.1-P
Bra035427.1-P
Bra036048.1-P
Bra036557.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15540.1	Bra015289.1-P	AT1G04100.1	21734647
AT3G15540.1	Bra026755.1-P	AT1G15580.1	21734647
AT3G15540.1	Bra016517.1-P	AT1G19220.1	21734647
AT3G15540.1	Bra025720.1-P	AT1G19220.1	21734647
AT3G15540.1	Bra012190.1-P	AT1G19850.1	14729917
AT3G15540.1	Bra016492.1-P	AT1G19850.1	14729917
AT3G15540.1	Bra025775.1-P	AT1G19850.1	14729917
AT3G15540.1	Bra012190.1-P	AT1G19850.1	21734647
AT3G15540.1	Bra016492.1-P	AT1G19850.1	21734647
AT3G15540.1	Bra025775.1-P	AT1G19850.1	21734647
AT3G15540.1	Bra012190.1-P	AT1G19850.1	22096563
AT3G15540.1	Bra016492.1-P	AT1G19850.1	22096563
AT3G15540.1	Bra025775.1-P	AT1G19850.1	22096563
AT3G15540.1	Bra014303.1-P	AT1G51950.1	21798944
AT3G15540.1	Bra018938.1-P	AT1G51950.1	21798944
AT3G15540.1	Bra035427.1-P	AT1G59750.1	22096563
AT3G15540.1	Bra040122.1-P	AT3G04730.1	21734647
AT3G15540.1	Bra040398.1-P	AT3G04730.1	21734647
AT3G15540.1	Bra001598.1-P	AT3G15540.1	14729917
AT3G15540.1	Bra021117.1-P	AT3G15540.1	14729917
AT3G15540.1	Bra027232.1-P	AT3G15540.1	14729917
AT3G15540.1	Bra001634.1-P	AT3G16500.1	21734647
AT3G15540.1	Bra021184.1-P	AT3G16500.1	21734647
AT3G15540.1	Bra022164.1-P	AT3G16500.1	21734647
AT3G15540.1	Bra001670.1-P	AT3G17600.1	21734647
AT3G15540.1	Bra021257.1-P	AT3G17600.1	21734647
AT3G15540.1	Bra022224.1-P	AT3G17600.1	21734647
AT3G15540.1	Bra001900.1-P	AT3G23050.1	21798944
AT3G15540.1	Bra033886.1-P	AT3G23050.1	21798944
AT3G15540.1	Bra012910.1-P	AT3G50060.1	17675404
AT3G15540.1	Bra029990.1-P	AT3G50060.1	17675404
AT3G15540.1	Bra036048.1-P	AT3G50060.1	17675404
AT3G15540.1	Bra039732.1-P	AT4G14560.1	21798944
AT3G15540.1	Bra039732.1-P	AT4G14560.1	9342315
AT3G15540.1	Bra013748.1-P	AT4G23980.1	22096563
AT3G15540.1	Bra019255.1-P	AT4G23980.1	22096563
AT3G15540.1	Bra002327.1-P	AT5G20730.1	14729917
AT3G15540.1	Bra020125.1-P	AT5G20730.1	14729917
AT3G15540.1	Bra009867.1-P	AT5G25890.1	21734647
AT3G15540.1	Bra036557.1-P	AT5G25890.1	21734647
AT3G15540.1	Bra028110.1-P	AT5G37020.1	14729917
AT3G15540.1	Bra002479.1-P	AT5G60450.1	22096563
AT3G15540.1	Bra024406.1-P	AT5G65670.1	21734647
AT3G15540.1	Bra037824.1-P	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20135	Canola	cytosol, nucleus, plastid	100.0	100.0
CDY21845	Canola	cytosol, extracellular, nucleus	97.97	97.97
Bra001598.1-P	Field mustard	nucleus	91.88	93.3
AT3G15540.1	Thale cress	nucleus	90.36	90.36
Bra027232.1-P	Field mustard	nucleus	88.83	90.21
KRH47514	Soybean	nucleus	58.38	61.5
KRH09813	Soybean	nucleus	57.87	60.96
KRH44390	Soybean	nucleus	58.38	58.97
KRH23504	Soybean	nucleus	56.35	58.73
Bra026755.1-P	Field mustard	nucleus	46.19	58.33
Bra018993.1-P	Field mustard	nucleus	58.38	56.65
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	54.82	56.25
PGSC0003DMT400006800	Potato	mitochondrion	54.82	55.38
Solyc03g120380.2.1	Tomato	nucleus	53.3	54.69
PGSC0003DMT400042572	Potato	nucleus	28.43	51.85
Bra023771.1-P	Field mustard	nucleus	42.13	48.54
Bra033890.1-P	Field mustard	nucleus	42.13	48.26
Bra001899.1-P	Field mustard	nucleus	41.12	47.37
Bra032521.1-P	Field mustard	nucleus	43.15	47.22
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	42.64	45.16
Bra027504.1-P	Field mustard	nucleus	43.15	44.5
Bra039732.1-P	Field mustard	nucleus	38.07	43.86
Bra040398.1-P	Field mustard	nucleus	47.21	40.26
Bra040122.1-P	Field mustard	nucleus	45.18	39.56
Bra015298.1-P	Field mustard	nucleus	43.65	38.39
Bra037824.1-P	Field mustard	plastid	37.56	37.95
Bra032520.1-P	Field mustard	nucleus	43.65	37.89
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.69	37.19
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	44.67	37.13
Bra030560.1-P	Field mustard	nucleus	43.15	37.12
Bra039855.1-P	Field mustard	nucleus	43.65	36.91
Bra024406.1-P	Field mustard	nucleus	38.58	32.62
Bra030219.1-P	Field mustard	nucleus	42.64	31.58
Bra011082.1-P	Field mustard	nucleus	44.67	30.34
Bra031850.1-P	Field mustard	mitochondrion	42.64	28.77

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra021117	EnsemblPlants:Bra021117.1
EnsemblPlants:Bra021117.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4DX71	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF87	SUPFAM:SSF54277	UniParc:UPI0002543DB5	SEG:seg	:

Description

AT3G15540 (E=7e-100) IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor

Coordinates

chrA01:-:23859741..23860898

Molecular Weight (calculated)

21816.2 Da

IEP (calculated)

4.845

GRAVY (calculated)

-0.381

Length

197 amino acids

Sequence
(BLAST)

001: MEKDGLELEI TELRLGLPGR DVTEKMMKKR GFTEMIMTSS GSNSEQCESG VVSSGVDVEK VNETPAVKTQ VVGWPPVCSY RRKNSCKEVS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFHGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF IESCRRLRIM KRSEATGFGL QPRGLDE

Best Arabidopsis Sequence Match ( AT3G15540.1 )
(BLAST)

001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE

Arabidopsis Description

IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.