Factsheet for Bra029990.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra002327.1-P
Bra020125.1-P
Bra021117.1-P
Bra027190.1-P
Bra027232.1-P
Bra035427.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	Bra035427.1-P	AT1G59750.1	17675404
AT3G50060.1	Bra001598.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra021117.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra027232.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra027190.1-P	AT3G16120.1	21798944
AT3G50060.1	Bra002327.1-P	AT5G20730.1	17675404
AT3G50060.1	Bra020125.1-P	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036048.1-P	Field mustard	nucleus	69.05	76.32
Bra012910.1-P	Field mustard	nucleus	75.51	75.77
CDX68566	Canola	nucleus	80.27	75.16
AT3G50060.1	Thale cress	nucleus	73.47	71.76
Bra012149.1-P	Field mustard	nucleus	55.1	54.73
KRH05621	Soybean	nucleus	45.58	50.0
Bra017813.1-P	Field mustard	nucleus	44.9	49.81
KRH15420	Soybean	nucleus	44.56	47.99
KRH61351	Soybean	nucleus	41.84	47.49
Bra032176.1-P	Field mustard	nucleus	45.92	46.23
GSMUA_Achr4P20150_001	Banana	nucleus	41.84	45.72
Zm00001d005300_P001	Maize	nucleus	42.18	43.51
GSMUA_Achr3P13070_001	Banana	nucleus	42.86	43.45
Bra010593.1-P	Field mustard	nucleus	44.9	43.28
GSMUA_Achr9P22600_001	Banana	nucleus	42.18	43.06
Bra011749.1-P	Field mustard	nucleus	46.26	41.46
GSMUA_Achr1P26140_001	Banana	nucleus	39.46	41.13
Os09t0106700-01	Rice	nucleus	44.22	40.75
GSMUA_Achr1P09750_001	Banana	nucleus	40.82	40.4
VIT_03s0180g00210.t01	Wine grape	nucleus	41.5	40.26
GSMUA_Achr4P12950_001	Banana	nucleus	36.39	40.23
GSMUA_Achr4P09450_001	Banana	nucleus	41.16	40.07
GSMUA_Achr3P28230_001	Banana	nucleus	38.78	39.58
GSMUA_Achr8P25220_001	Banana	nucleus	39.12	38.85
TraesCS5B01G157300.1	Wheat	nucleus	44.22	38.81
GSMUA_AchrUn_...	Banana	nucleus	37.07	38.52
TraesCS5A01G159600.1	Wheat	nucleus	43.88	38.39
TraesCS5D01G164600.1	Wheat	nucleus	44.22	37.9
Zm00001d019712_P001	Maize	nucleus	44.22	37.68
EER98550	Sorghum	nucleus	43.54	34.97
HORVU5Hr1G049880.1	Barley	plastid	42.86	29.72
Bra039036.1-P	Field mustard	nucleus	19.39	29.53
Bra015992.1-P	Field mustard	nucleus	21.09	27.19
Bra001323.1-P	Field mustard	nucleus	30.61	26.87
Bra008096.1-P	Field mustard	nucleus	20.75	26.07
Bra037004.1-P	Field mustard	nucleus	19.73	24.07
Bra011441.1-P	Field mustard	nucleus	19.73	23.29
Bra034057.1-P	Field mustard	nucleus	30.61	23.26
Bra016575.1-P	Field mustard	nucleus	19.05	23.14
Bra034565.1-P	Field mustard	nucleus	19.39	22.71
Bra031008.1-P	Field mustard	nucleus	19.05	22.67
Bra007186.1-P	Field mustard	nucleus	27.89	22.1
Bra033078.1-P	Field mustard	nucleus	21.43	22.03
Bra025652.1-P	Field mustard	nucleus	19.05	21.62
Bra003995.1-P	Field mustard	nucleus	21.09	20.88
Bra004394.1-P	Field mustard	nucleus	21.77	20.0
Bra005006.1-P	Field mustard	nucleus	26.87	19.85
Bra002107.1-P	Field mustard	nucleus	21.09	19.14
Bra023637.1-P	Field mustard	nucleus	20.41	18.87
Bra006422.1-P	Field mustard	nucleus	20.07	18.85
Bra016285.1-P	Field mustard	nucleus	21.43	17.85

Protein Annotations

EnsemblPlants:Bra029990.1	EnsemblPlants:Bra029990.1-P	EnsemblPlantsGene:Bra029990	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000254434C	UniProt:M4EMH0	MapMan:15.5.2.1	:	:

Description

AT5G67300 (E=4e-075) ATMYBR1, ATMYB44, MYBR1 | MYBR1 (MYB DOMAIN PROTEIN R1); DNA binding / transcription factor

Coordinates

chrA01:-:15525617..15526501

Molecular Weight (calculated)

32437.4 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.677

Length

294 amino acids

Sequence
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEHYGPRNWS EVSKSVPGRS GKSCRLRWCN QLSPDVEHRP FSSDEDKTIV SARATFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCLGG GGDGNLIVMR TEEDRRKKRR SVSSESATPV DTGLYMSPES PTGIPSPPSP VDAQLLKPMA MPSPVEMSSV EEDPTASLSL SLSLPGPDVR
201: QELKNAGSRH NSLLFPRFGS QMKINVEERG EARVGHKAEF LTVVQEMIKV EVRSYMAEMQ KNSGGGGGEF IVSGFYDAGN GGFRDSGMII PKVE

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.