Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G157300.1 | Wheat | nucleus | 75.55 | 71.94 |
| Zm00001d005300_P001 | Maize | nucleus | 64.26 | 71.93 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 75.24 | 71.43 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 75.55 | 70.26 |
| Zm00001d019712_P001 | Maize | nucleus | 72.73 | 67.25 |
| EER98550 | Sorghum | nucleus | 75.55 | 65.85 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 52.04 | 61.71 |
| KRH05621 | Soybean | nucleus | 49.53 | 58.96 |
| KRH61351 | Soybean | nucleus | 47.02 | 57.92 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 56.43 | 57.69 |
| KRH57983 | Soybean | nucleus | 51.41 | 55.59 |
| KRH77058 | Soybean | nucleus | 52.98 | 55.41 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 48.9 | 55.32 |
| KRH15420 | Soybean | nucleus | 47.34 | 55.31 |
| KRH28419 | Soybean | nucleus | 51.41 | 55.22 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 50.16 | 55.17 |
| HORVU5Hr1G049880.1 | Barley | plastid | 72.1 | 54.25 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 49.84 | 53.54 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 52.35 | 53.35 |
| PGSC0003DMT400008569 | Potato | nucleus | 52.98 | 52.81 |
| Solyc04g078420.1.1 | Tomato | nucleus | 54.23 | 52.74 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 49.84 | 52.65 |
| CDY22442 | Canola | nucleus | 45.14 | 52.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.4 | 52.3 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 43.57 | 52.26 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 46.71 | 51.74 |
| CDY12830 | Canola | nucleus | 40.75 | 51.38 |
| CDY38933 | Canola | nucleus | 47.02 | 51.37 |
| Bra032176.1-P | Field mustard | nucleus | 47.02 | 51.37 |
| CDX89554 | Canola | nucleus | 47.02 | 51.19 |
| CDY44045 | Canola | nucleus | 45.45 | 50.88 |
| Os02t0187700-00 | Rice | nucleus | 47.96 | 50.83 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 48.28 | 50.83 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 45.77 | 50.69 |
| Bra012149.1-P | Field mustard | nucleus | 46.08 | 49.66 |
| CDY01420 | Canola | nucleus | 40.75 | 49.43 |
| CDX75635 | Canola | nucleus | 46.08 | 49.16 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 45.45 | 48.99 |
| CDY23023 | Canola | nucleus | 43.57 | 47.93 |
| CDX69287 | Canola | nucleus | 45.77 | 47.71 |
| Bra017813.1-P | Field mustard | nucleus | 39.5 | 47.55 |
| CDY29542 | Canola | nucleus | 39.5 | 47.55 |
| Bra010593.1-P | Field mustard | nucleus | 45.45 | 47.54 |
| Os06t0637500-02 | Rice | cytosol, mitochondrion, nucleus | 46.08 | 47.27 |
| AT2G23290.1 | Thale cress | nucleus | 45.77 | 47.25 |
| AT5G67300.1 | Thale cress | nucleus | 45.14 | 47.21 |
| CDX72621 | Canola | nucleus | 39.19 | 47.17 |
| Bra012910.1-P | Field mustard | nucleus | 43.26 | 47.1 |
| CDY02098 | Canola | nucleus | 43.26 | 47.1 |
| Solyc02g092930.1.1 | Tomato | nucleus | 52.66 | 46.54 |
| Bra036048.1-P | Field mustard | nucleus | 38.56 | 46.24 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 53.6 | 46.09 |
| CDY57355 | Canola | nucleus | 40.13 | 46.04 |
| CDY30608 | Canola | nucleus | 38.24 | 46.04 |
| AT3G50060.1 | Thale cress | nucleus | 43.26 | 45.85 |
| AT4G37260.1 | Thale cress | nucleus | 45.14 | 45.0 |
| Bra011749.1-P | Field mustard | nucleus | 46.08 | 44.82 |
| Bra029990.1-P | Field mustard | nucleus | 40.75 | 44.22 |
| Os01t0977300-01 | Rice | nucleus | 32.29 | 41.2 |
| CDX68566 | Canola | nucleus | 35.42 | 35.99 |
| Os08t0450900-00 | Rice | nucleus | 22.26 | 35.5 |
| Os01t0274800-01 | Rice | nucleus | 22.88 | 27.55 |
| Os03t0720800-01 | Rice | nucleus | 21.0 | 27.35 |
| Os11t0207600-00 | Rice | nucleus, plastid | 21.94 | 26.22 |
| Os08t0435700-00 | Rice | nucleus | 20.38 | 25.19 |
| Os05t0350900-01 | Rice | nucleus | 15.36 | 23.22 |
| Os01t0850400-01 | Rice | nucleus | 27.9 | 21.55 |
| Os08t0435725-00 | Rice | cytosol | 1.57 | 5.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:4346379 | EMBL:AK066141 | ProteinID:BAF24476.1 | ProteinID:BAT06802.1 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | EnsemblPlantsGene:Os09g0106700 |
| EnsemblPlants:Os09t0106700-01 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF691 | UniProt:Q0J3I9 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0000DD9606 | RefSeq:XP_015612590.1 | SEG:seg |
Description
R2R3-MYBSimilar to Myb proto-oncogene protein (C-myb). (Os09t0106700-01)
Coordinates
chr9:-:656788..658373
Molecular Weight (calculated)
34575.2 Da
IEP (calculated)
10.211
GRAVY (calculated)
-0.643
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MMASCRRGGG GDVDRIKGPW SPEEDEALQR LVGRHGARNW SLISKSIPGR SGKSCRLRWC NQLSPQVEHR PFTPEEDDTI LRAHARFGNK WATIARLLAG
101: RTDNAIKNHW NSTLKRKHHS SLLADDLRPL KRTTSDGHPT LSSAAAPGSP SGSDLSDSSH HSLPSQMPSS PPHLLLPQHV YRPVARAGGV VVPPPPPPPP
201: PATSLSLSLS LPGLDHPHPD PSTPSEPAVQ LQPPPPSQMP PPTPSCVRQE PPQMPFQLQP PPPPRPSAPF SAEFLAMMQE MIRIEVRNYM SGSAAVDPRS
301: SPDNGVRAAS RIMGMAKIE
101: RTDNAIKNHW NSTLKRKHHS SLLADDLRPL KRTTSDGHPT LSSAAAPGSP SGSDLSDSSH HSLPSQMPSS PPHLLLPQHV YRPVARAGGV VVPPPPPPPP
201: PATSLSLSLS LPGLDHPHPD PSTPSEPAVQ LQPPPPSQMP PPTPSCVRQE PPQMPFQLQP PPPPRPSAPF SAEFLAMMQE MIRIEVRNYM SGSAAVDPRS
301: SPDNGVRAAS RIMGMAKIE
001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE
Arabidopsis Description
MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.