Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87862 | Sorghum | nucleus | 62.95 | 65.16 |
| Zm00001d012379_P001 | Maize | nucleus | 58.84 | 60.6 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 63.44 | 56.71 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 62.95 | 55.44 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 62.47 | 55.13 |
| HORVU3Hr1G085570.1 | Barley | plastid | 60.53 | 54.23 |
| GSMUA_Achr9P03720_001 | Banana | nucleus | 37.29 | 47.83 |
| GSMUA_Achr6P33470_001 | Banana | nucleus | 24.94 | 45.78 |
| KRH75766 | Soybean | nucleus | 36.08 | 42.57 |
| KRG88785 | Soybean | nucleus | 35.84 | 42.05 |
| Solyc09g011780.2.1 | Tomato | nucleus | 37.53 | 40.79 |
| PGSC0003DMT400052395 | Potato | nucleus | 37.29 | 40.63 |
| VIT_13s0019g03200.t01 | Wine grape | nucleus | 36.56 | 39.95 |
| KRH15016 | Soybean | nucleus | 36.8 | 38.68 |
| Solyc05g052850.2.1 | Tomato | nucleus | 33.9 | 37.43 |
| PGSC0003DMT400069921 | Potato | nucleus | 33.9 | 37.43 |
| VIT_08s0007g01540.t01 | Wine grape | nucleus | 36.8 | 37.07 |
| CDX72208 | Canola | nucleus | 32.45 | 36.41 |
| Bra007186.1-P | Field mustard | nucleus | 32.69 | 36.39 |
| CDY27271 | Canola | nucleus | 32.69 | 36.19 |
| AT3G55730.1 | Thale cress | nucleus | 34.14 | 35.34 |
| CDY20494 | Canola | nucleus | 30.75 | 34.51 |
| KRH73115 | Soybean | nucleus | 32.69 | 33.83 |
| Bra005006.1-P | Field mustard | nucleus | 30.51 | 31.66 |
| GSMUA_Achr5P28780_001 | Banana | nucleus | 30.02 | 31.23 |
| CDX74825 | Canola | nucleus | 30.02 | 30.92 |
| Os02t0187700-00 | Rice | nucleus | 22.28 | 30.56 |
| Os06t0637500-02 | Rice | cytosol, mitochondrion, nucleus | 22.52 | 29.9 |
| Os01t0977300-01 | Rice | nucleus | 17.92 | 29.6 |
| Os08t0450900-00 | Rice | nucleus | 14.29 | 29.5 |
| AT2G39880.1 | Thale cress | nucleus | 25.91 | 29.16 |
| Os09t0106700-01 | Rice | nucleus | 21.55 | 27.9 |
| Os03t0720800-01 | Rice | nucleus | 16.46 | 27.76 |
| Os01t0274800-01 | Rice | nucleus | 17.68 | 27.55 |
| Os08t0435700-00 | Rice | nucleus | 15.98 | 25.58 |
| Os11t0207600-00 | Rice | nucleus, plastid | 15.5 | 23.97 |
| Os05t0350900-01 | Rice | nucleus | 8.23 | 16.11 |
| Os08t0435725-00 | Rice | cytosol | 0.73 | 3.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:4324801 | EMBL:AK108582 | ProteinID:BAB89519.1 | ProteinID:BAB92840.1 |
| ProteinID:BAF06728.1 | ProteinID:BAS75241.1 | ProteinID:EAZ14160.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | EnsemblPlantsGene:Os01g0850400 | EnsemblPlants:Os01t0850400-01 | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | UniProt:Q8S282 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00000A5DB9 | RefSeq:XP_015630688.1 | SEG:seg | : | : | : |
Description
R2R3-MYBSimilar to MYBY1 protein (Fragment). (Os01t0850400-01)
Coordinates
chr1:-:36606535..36608135
Molecular Weight (calculated)
44331.8 Da
IEP (calculated)
6.697
GRAVY (calculated)
-0.575
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSETAASPP PPPPNPPAAD STHSSPASMT DETHGAGAHP DESQPHRSSS SSSSPPVAVD GETRVPLPVR SLPQPSHPSP PPSGEDEDDV VITGQIAVGD
101: AAGAAMEERV KGPWSSDEDT LLSNLVEKLG PRNWTLIARG IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAI HGNKWAAIAK LLVGRTDNAI
201: KNHWNSTLRR RHCTGGRCTQ GGVMKRAIPE RPRSVSEEPW PLGNLSSLNV REAMEAPAQT VSESYVGAWQ IGDQSCKTEV VDPPYLARPV AKVGAFKPYN
301: VGPAQSSQKE MLSFATKFDS NLHPFKPENG VCKFVDPTSF AAEVPNKCGH GCCSSHGQLR KNSLLGPEFN EFEDHPPISD SSFASLVSEI SSIAWMKSGL
401: QSSDTLARSV PPA
101: AAGAAMEERV KGPWSSDEDT LLSNLVEKLG PRNWTLIARG IPGRSGKSCR LRWCNQLDPQ VKRKPFTEEE DRIIMAAHAI HGNKWAAIAK LLVGRTDNAI
201: KNHWNSTLRR RHCTGGRCTQ GGVMKRAIPE RPRSVSEEPW PLGNLSSLNV REAMEAPAQT VSESYVGAWQ IGDQSCKTEV VDPPYLARPV AKVGAFKPYN
301: VGPAQSSQKE MLSFATKFDS NLHPFKPENG VCKFVDPTSF AAEVPNKCGH GCCSSHGQLR KNSLLGPEFN EFEDHPPISD SSFASLVSEI SSIAWMKSGL
401: QSSDTLARSV PPA
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Arabidopsis Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.