Factsheet for VIT_13s0019g03200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03720_001	Banana	nucleus	44.71	52.48
VIT_08s0007g01540.t01	Wine grape	nucleus	56.35	51.95
KRH15016	Soybean	nucleus	52.38	50.38
PGSC0003DMT400069921	Potato	nucleus	47.09	47.59
Solyc05g052850.2.1	Tomato	nucleus	46.56	47.06
GSMUA_Achr6P33470_001	Banana	nucleus	27.51	46.22
CDX72208	Canola	nucleus	42.06	43.21
CDY27271	Canola	nucleus	42.59	43.16
Bra007186.1-P	Field mustard	nucleus	42.33	43.13
AT3G55730.1	Thale cress	nucleus	44.97	42.61
CDY20494	Canola	nucleus	40.74	41.85
KRH73115	Soybean	nucleus	43.39	41.1
Bra005006.1-P	Field mustard	nucleus	41.53	39.45
CDX74825	Canola	nucleus	41.53	39.15
Zm00001d012379_P001	Maize	nucleus	39.68	37.41
Os01t0850400-01	Rice	nucleus	39.95	36.56
VIT_07s0129g01050.t01	Wine grape	nucleus	30.16	36.54
OQU87862	Sorghum	nucleus	38.36	36.34
VIT_18s0001g11170.t01	Wine grape	nucleus	21.69	35.81
VIT_13s0067g01360.t01	Wine grape	nucleus	23.28	34.78
VIT_18s0001g09850.t01	Wine grape	nucleus	28.04	33.87
VIT_03s0180g00210.t01	Wine grape	nucleus	26.98	33.66
AT2G39880.1	Thale cress	nucleus	32.54	33.52
GSMUA_Achr5P28780_001	Banana	nucleus	34.13	32.49
TraesCS3A01G365200.1	Wheat	nucleus	38.1	31.17
HORVU3Hr1G085570.1	Barley	plastid	37.83	31.02
TraesCS3B01G397100.1	Wheat	nucleus	37.57	30.34
VIT_17s0000g01890.t01	Wine grape	nucleus	17.72	30.32
TraesCS3D01G358400.1	Wheat	nucleus	37.3	30.06
VIT_18s0001g15260.t01	Wine grape	nucleus	20.11	23.68
VIT_04s0044g01380.t01	Wine grape	nucleus	18.78	23.51
VIT_01s0026g02600.t01	Wine grape	nucleus	21.96	18.16
VIT_08s0056g01190.t01	Wine grape	golgi	19.84	16.82
VIT_14s0108g01010.t01	Wine grape	nucleus	19.84	15.76

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100240975	wikigene:100240975	MapMan:15.5.2.1	ProteinID:CBI31553	ProteinID:CBI31553.3
UniProt:D7TMI6	EMBL:FN595998	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100240975	wikigene:LOC100240975	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF524	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CA15A	ArrayExpress:VIT_13s0019g03200
EnsemblPlantsGene:VIT_13s0019g03200	EnsemblPlants:VIT_13s0019g03200.t01	RefSeq:XP_002276341	RefSeq:XP_002276341.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:4249767..4255522

Molecular Weight (calculated)

41190.7 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.566

Length

378 amino acids

Sequence
(BLAST)

001: MDQLQVDSAA AALVDEEDVV TANDARRDGD TRAGGSSSRV RGPWSPEEDA ILSQLVSKFG PRNWSLIARG ISGRSGKSCR LRWCNQLDPC VKRKPFTEEE
101: DRIIIAAHSH HGNKWASIAR LLPGRTDNAI KNHWNSTLKR QCKKLDMFKP ISGSMLEDGS PDRTKASSEE TMSPGDIDSR KPPEGRDASL MDDGPYQCEN
201: KVQTTEDHSS ISRPMARVSA FSVYNPPSGL RVGSAFSRAA PMKGPLVQTS KPHLEVCKFL EGVYSEPTIP LQCGHGCCEA PTGGQSQGSL LGPEFIEYME
301: PPPFSSHELA SIAAELNSIA WIKSGLVNSS SSMQDETAGQ RLCMGAAAQL KNEHLRLEEG RNKLMGMMPE VLPTQMPA

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.